Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ACE6HX_RS06830 Genome accession   NZ_CP170098
Coordinates   1370036..1370314 (+) Length   92 a.a.
NCBI ID   WP_034662686.1    Uniprot ID   A0AAE3WJG5
Organism   Bacillus pumilus strain X14-67     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1365036..1375314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACE6HX_RS06810 (ACE6HX_06810) - 1365350..1366969 (+) 1620 WP_034662692.1 ABC-F family ATP-binding cassette domain-containing protein -
  ACE6HX_RS06815 (ACE6HX_06815) - 1367206..1368438 (-) 1233 WP_375567376.1 aminopeptidase -
  ACE6HX_RS06820 (ACE6HX_06820) - 1368546..1368677 (-) 132 WP_003210922.1 protein YkpC -
  ACE6HX_RS06825 (ACE6HX_06825) mreBH 1368752..1369759 (-) 1008 WP_012009812.1 rod-share determining protein MreBH -
  ACE6HX_RS06830 (ACE6HX_06830) abrB 1370036..1370314 (+) 279 WP_034662686.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  ACE6HX_RS06835 (ACE6HX_06835) - 1370459..1371769 (+) 1311 WP_034662683.1 ATP-binding protein -
  ACE6HX_RS06840 (ACE6HX_06840) - 1371774..1372610 (+) 837 WP_106030785.1 gamma-glutamylcyclotransferase -
  ACE6HX_RS06845 (ACE6HX_06845) - 1372648..1373316 (+) 669 WP_034662681.1 TrkA family potassium uptake protein -
  ACE6HX_RS06850 (ACE6HX_06850) ade 1373579..1375309 (+) 1731 WP_106038782.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10305.97 Da        Isoelectric Point: 4.5332

>NTDB_id=1055012 ACE6HX_RS06830 WP_034662686.1 1370036..1370314(+) (abrB) [Bacillus pumilus strain X14-67]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGEKIVLKKYQPEGVCLMTGEITSENHDYGNGQITLSAEGAE
LLLKELQEALQQ

Nucleotide


Download         Length: 279 bp        

>NTDB_id=1055012 ACE6HX_RS06830 WP_034662686.1 1370036..1370314(+) (abrB) [Bacillus pumilus strain X14-67]
TTGAAATCTATCGGAGTCGTAAGAAAAGTAGACGAACTAGGGCGTATTGTGATGCCAATCGAATTAAGAAGAGCACTTGA
TATTGCTATTAAAGACAGTATGGAATTTTTTATAGATGGGGAGAAAATCGTCTTGAAAAAATACCAGCCAGAGGGCGTTT
GCCTCATGACTGGTGAGATTACATCGGAGAACCATGATTATGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTACTGTTAAAAGAGCTGCAAGAAGCTCTTCAGCAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

100

0.554

Multiple sequence alignment