Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ACE6HX_RS05565 Genome accession   NZ_CP170098
Coordinates   1142099..1143925 (+) Length   608 a.a.
NCBI ID   WP_375567244.1    Uniprot ID   -
Organism   Bacillus pumilus strain X14-67     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1137099..1148925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACE6HX_RS05540 (ACE6HX_05540) - 1137362..1138027 (-) 666 WP_060596006.1 TerC family protein -
  ACE6HX_RS05545 (ACE6HX_05545) - 1138203..1138323 (+) 121 Protein_1035 hypothetical protein -
  ACE6HX_RS05550 (ACE6HX_05550) mecA 1138290..1138955 (+) 666 WP_012009573.1 adaptor protein MecA Regulator
  ACE6HX_RS05555 (ACE6HX_05555) cls 1139042..1140562 (+) 1521 WP_088003078.1 cardiolipin synthase -
  ACE6HX_RS05560 (ACE6HX_05560) - 1140724..1141884 (+) 1161 WP_106061795.1 competence protein CoiA -
  ACE6HX_RS05565 (ACE6HX_05565) pepF 1142099..1143925 (+) 1827 WP_375567244.1 oligoendopeptidase F Regulator
  ACE6HX_RS05570 (ACE6HX_05570) - 1144029..1144202 (-) 174 WP_034663238.1 hypothetical protein -
  ACE6HX_RS05575 (ACE6HX_05575) - 1144499..1145410 (-) 912 WP_034663234.1 ClpXP adapter SpxH family protein -
  ACE6HX_RS05580 (ACE6HX_05580) - 1145407..1145805 (-) 399 WP_008355333.1 thiol management oxidoreductase -
  ACE6HX_RS05585 (ACE6HX_05585) - 1146082..1146849 (-) 768 WP_034663232.1 lytic transglycosylase domain-containing protein -
  ACE6HX_RS05590 (ACE6HX_05590) - 1146871..1147449 (-) 579 WP_106036696.1 CYTH domain-containing protein -
  ACE6HX_RS05595 (ACE6HX_05595) - 1147686..1148051 (+) 366 WP_034663228.1 hypothetical protein -
  ACE6HX_RS05600 (ACE6HX_05600) - 1148085..1148714 (+) 630 WP_003211990.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70218.91 Da        Isoelectric Point: 5.3619

>NTDB_id=1055006 ACE6HX_RS05565 WP_375567244.1 1142099..1143925(+) (pepF) [Bacillus pumilus strain X14-67]
MTSQSKNNHLPDRSEVKEENKWRLEDIFESVDAWNKEFEAVKKEIPKLAQFKGKLAHSADVLYEALTFQDQLSEKLGKLY
TYAHMKYDEDTTNSSFQALNDKASNLFTQLSSTSAYIVPEILSIQEDKLQQFILEKEELKLYSHALEEINKERPHILSEE
QEALLAEASEPLSTSSTTFSMFNNADISFPSVKDENGEEKKITHGNFITFLNSDDREVRKNAFKAVYKTYDQYKNTLAST
LSGSIKKDNFYAKVRNYNSAREAALSRNSIPEEVYDNLIDTVHQYLPLLHRYIELRKKVLKLDEVHNYDLYTPLVKDAGM
KLTYDEAKDYMLKGLAPLGEEYVSVLKEGLSNRWVDVYENKGKRSGAYSSGSYGTNPYILMNWQNNIDNLFTLAHEFGHS
VHSYYTRKHQPYPYGNYSIFVAEVASTTNEALLGEYLLNHLDDKKQRLYVLNHLLEGFRGTVFRQTMFAEFEHLIHVKAQ
EGEALTPEFMTNLYYDLNKKYFGDGMVVDKEIGLEWTRIPHFYYNYYVYQYATGYSAAQALSKQILEEGKPAVERYTDFL
KAGSSDYPINVLKKAGVDMASKEPIKAACQLFEEKLKEMEELISKTDE

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=1055006 ACE6HX_RS05565 WP_375567244.1 1142099..1143925(+) (pepF) [Bacillus pumilus strain X14-67]
ATGACTTCACAAAGCAAAAATAACCATTTACCAGACAGAAGCGAAGTAAAAGAAGAAAACAAATGGCGTCTTGAAGATAT
TTTCGAAAGCGTTGATGCATGGAACAAGGAATTCGAAGCTGTCAAAAAAGAAATTCCTAAGCTAGCCCAATTTAAAGGCA
AGCTGGCCCATTCTGCTGATGTACTGTATGAAGCCCTAACCTTTCAGGATCAGCTTTCTGAAAAGCTTGGTAAGCTTTAT
ACATATGCGCACATGAAATACGATGAGGATACAACTAACTCATCATTTCAAGCGCTGAATGATAAAGCATCGAATTTATT
TACACAGCTCTCTAGTACTTCTGCTTATATTGTTCCAGAGATTTTATCGATTCAAGAAGATAAATTGCAGCAGTTTATTC
TGGAAAAAGAAGAATTAAAACTGTATTCCCATGCTCTCGAAGAAATTAATAAAGAGCGTCCACATATTTTAAGTGAGGAG
CAAGAAGCTTTATTAGCTGAGGCCTCTGAACCACTCTCAACTTCATCTACTACTTTTAGTATGTTTAACAATGCTGATAT
TTCGTTCCCTTCTGTAAAGGATGAAAATGGGGAAGAAAAGAAGATTACCCACGGCAACTTTATCACATTTTTAAACAGTG
ATGACCGTGAAGTGAGAAAGAATGCCTTTAAAGCTGTGTATAAAACGTATGATCAGTATAAAAACACGCTTGCTTCGACA
CTGAGCGGTTCGATTAAAAAGGATAATTTTTATGCAAAAGTACGAAATTATAACTCAGCAAGAGAAGCGGCACTATCTCG
GAACAGTATTCCAGAAGAAGTATATGACAATCTGATTGATACAGTTCATCAATATTTACCGTTATTACACCGTTATATTG
AATTGCGTAAAAAGGTATTAAAGCTTGATGAAGTGCACAATTATGACTTGTATACACCACTTGTAAAAGATGCTGGTATG
AAGCTAACCTACGATGAAGCAAAAGATTATATGCTAAAAGGGTTAGCGCCATTAGGAGAAGAATATGTGTCCGTGTTAAA
AGAGGGACTGAGCAATCGCTGGGTAGACGTTTATGAGAATAAAGGGAAACGCAGCGGTGCGTATTCATCTGGAAGCTATG
GTACAAATCCATATATCCTCATGAACTGGCAAAATAATATTGATAATTTATTTACACTGGCTCATGAATTTGGGCACTCT
GTCCACAGCTACTATACAAGAAAGCATCAGCCATATCCGTATGGAAACTATAGTATCTTTGTAGCTGAAGTGGCTTCTAC
GACAAACGAAGCGTTACTTGGCGAATACCTGCTGAATCATCTAGATGATAAAAAGCAGCGTTTGTATGTGTTAAATCACT
TGTTAGAAGGATTTAGAGGAACGGTATTCAGACAGACGATGTTTGCTGAGTTTGAGCATCTTATTCATGTGAAAGCGCAA
GAAGGAGAGGCTTTAACGCCGGAATTTATGACGAACCTTTATTACGACCTGAATAAGAAGTATTTTGGAGACGGCATGGT
TGTGGATAAAGAAATCGGATTAGAATGGACGAGAATTCCTCACTTCTATTACAACTATTATGTCTATCAATATGCAACAG
GCTATAGTGCTGCACAGGCATTAAGCAAGCAAATATTAGAAGAAGGAAAACCTGCGGTGGAGCGCTACACAGACTTCCTT
AAAGCAGGAAGCTCTGATTATCCAATTAATGTGTTGAAAAAAGCAGGTGTTGATATGGCTTCCAAAGAACCAATCAAAGC
AGCATGTCAATTGTTCGAAGAAAAGCTGAAAGAAATGGAAGAGCTCATCTCTAAAACGGATGAGTGA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-590)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.158

97.697

0.48

Multiple sequence alignment