Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ACE6HX_RS01910 Genome accession   NZ_CP170098
Coordinates   348729..349157 (-) Length   142 a.a.
NCBI ID   WP_034664156.1    Uniprot ID   A0AAE3WLD3
Organism   Bacillus pumilus strain X14-67     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 343729..354157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACE6HX_RS01870 (ACE6HX_01870) - 343897..344226 (+) 330 WP_034664467.1 YckD family protein -
  ACE6HX_RS01875 (ACE6HX_01875) - 344276..345040 (-) 765 WP_060595506.1 MBL fold metallo-hydrolase -
  ACE6HX_RS01880 (ACE6HX_01880) - 345156..345572 (+) 417 WP_375566859.1 Lrp/AsnC family transcriptional regulator -
  ACE6HX_RS01885 (ACE6HX_01885) - 345601..346407 (+) 807 WP_375566861.1 aminoglycoside N(3)-acetyltransferase -
  ACE6HX_RS01890 (ACE6HX_01890) - 346409..346795 (-) 387 WP_106038505.1 competence protein ComJ -
  ACE6HX_RS01895 (ACE6HX_01895) - 346916..347503 (-) 588 WP_375566863.1 methyl-accepting chemotaxis protein -
  ACE6HX_RS01900 (ACE6HX_01900) - 347570..348415 (-) 846 WP_254637611.1 methyl-accepting chemotaxis protein -
  ACE6HX_RS01905 (ACE6HX_01905) - 348445..348600 (-) 156 WP_268496291.1 hypothetical protein -
  ACE6HX_RS01910 (ACE6HX_01910) nucA/comI 348729..349157 (-) 429 WP_034664156.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  ACE6HX_RS01915 (ACE6HX_01915) - 349525..351594 (+) 2070 WP_034664154.1 hydantoinase/oxoprolinase family protein -
  ACE6HX_RS01920 (ACE6HX_01920) - 351584..353569 (+) 1986 WP_375566866.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15886.79 Da        Isoelectric Point: 5.5444

>NTDB_id=1054991 ACE6HX_RS01910 WP_034664156.1 348729..349157(-) (nucA/comI) [Bacillus pumilus strain X14-67]
MKLLKIILLLLLIVVGVATGYIQLEQSKQETTNSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSVCTIDRKHSDEQRDQS
LHGIPTKRGYDRDEWPMAMCKEGGTGASVKYISPSDNRGAGSWVGHQLSDDPDGTRIQFIID

Nucleotide


Download         Length: 429 bp        

>NTDB_id=1054991 ACE6HX_RS01910 WP_034664156.1 348729..349157(-) (nucA/comI) [Bacillus pumilus strain X14-67]
ATGAAACTTCTTAAAATCATTCTCTTGCTTTTACTAATCGTCGTTGGTGTAGCAACAGGCTATATTCAGCTGGAGCAAAG
TAAACAAGAGACGACGAATTCATCTTATGACAAAACCATTCACTTCCCATCAGATCGTTACCCAGAAACCGCGAAGCACA
TAGAAGAGGCAATTGATGAAGGCCATTCATCCGTATGTACGATTGACCGTAAACATAGCGATGAACAGAGAGACCAATCA
CTTCATGGCATCCCAACAAAGCGCGGGTATGATCGGGACGAATGGCCGATGGCGATGTGTAAGGAAGGAGGAACAGGAGC
TTCTGTCAAATATATCAGTCCTTCAGATAATAGGGGAGCAGGCTCATGGGTCGGTCATCAATTATCGGATGATCCTGACG
GCACAAGAATACAATTTATCATCGATTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

66.116

85.211

0.563

Multiple sequence alignment