Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   ACE6HX_RS00020 Genome accession   NZ_CP170098
Coordinates   3056..4168 (+) Length   370 a.a.
NCBI ID   WP_106038840.1    Uniprot ID   -
Organism   Bacillus pumilus strain X14-67     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACE6HX_RS00005 (ACE6HX_00005) dnaA 1..1341 (+) 1341 WP_034660669.1 chromosomal replication initiator protein DnaA -
  ACE6HX_RS00010 (ACE6HX_00010) dnaN 1537..2673 (+) 1137 WP_034660670.1 DNA polymerase III subunit beta -
  ACE6HX_RS00015 (ACE6HX_00015) yaaA 2824..3039 (+) 216 WP_003215257.1 S4 domain-containing protein YaaA -
  ACE6HX_RS00020 (ACE6HX_00020) recF 3056..4168 (+) 1113 WP_106038840.1 DNA replication/repair protein RecF Machinery gene
  ACE6HX_RS00025 (ACE6HX_00025) remB 4186..4431 (+) 246 WP_008360920.1 extracellular matrix regulator RemB -
  ACE6HX_RS00030 (ACE6HX_00030) gyrB 4489..6405 (+) 1917 WP_060597746.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  ACE6HX_RS00035 (ACE6HX_00035) gyrA 6638..9142 (+) 2505 WP_060597709.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42589.66 Da        Isoelectric Point: 7.3662

>NTDB_id=1054986 ACE6HX_RS00020 WP_106038840.1 3056..4168(+) (recF) [Bacillus pumilus strain X14-67]
MYIQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDQDYAKIEGRVIKKNGP
LPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIMFAPEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILSQR
NHYLKQLQTRKQTDQAMLEVLTEQLIDAAVKVVKRRLTFTKQLEKWAQPLHFGISRELETLTLQYQTSIEVSEASDLSKI
KNSYEESFQKLRDREIDRGVTLWGPHRDDLLFFVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVEGIDHATLKEAEIFRVASGKVID

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=1054986 ACE6HX_RS00020 WP_106038840.1 3056..4168(+) (recF) [Bacillus pumilus strain X14-67]
ATGTACATTCAAAGTCTGGCGTTAACTTCATACAGAAACTATGAACACACTGAGCTTCAATTCGACAACAAGGTGAATGT
CATGATCGGTGAGAATGCCCAAGGTAAAACGAACTTGATGGAAGCGATCTATGTATTGTCGATGGCAAAGTCGCATCGTA
CGTCAAATGATAAAGAACTTATCCGATGGGACCAAGACTATGCTAAAATAGAAGGTAGAGTCATCAAAAAAAATGGTCCA
CTCCCAATGCAGCTCGTGATCTCAAAAAAAGGGAAAAAGGGCAAGGTCAATCACATTGAACAACAGAAGCTCAGTCATTA
TGTTGGTGCGTTAAACACCATCATGTTTGCACCAGAGGACTTAAGTCTTGTGAAGGGCAGCCCGCAAATCCGCAGAAGAT
TCCTCGATATGGAGATTGGACAAGTTTCTGCTGTCTATTTGCATGATTTATCGCTCTATCAAAAAATCCTCTCTCAGCGG
AATCATTACTTGAAACAATTGCAGACAAGAAAGCAAACGGATCAAGCGATGCTGGAGGTTTTAACAGAGCAGTTGATTGA
TGCGGCAGTGAAAGTTGTCAAAAGACGACTGACTTTTACGAAACAGCTCGAGAAATGGGCGCAGCCGCTGCATTTTGGCA
TTTCTAGAGAGCTAGAAACACTCACGCTCCAATACCAGACTTCGATAGAGGTATCAGAAGCGTCAGACTTGTCGAAAATA
AAGAATAGCTATGAAGAATCGTTTCAGAAACTAAGAGACAGAGAAATAGACCGAGGAGTGACACTGTGGGGACCTCACAG
AGATGACCTTCTTTTCTTTGTGAATGGTCGGGATGTTCAGACATATGGCTCTCAAGGGCAGCAAAGAACAACAGCTCTTT
CACTAAAGCTGGCAGAAATCGACCTGATACATGAAGAAATCGGAGAATATCCCATTCTTCTACTCGATGATGTTTTATCT
GAACTTGATGATTACAGACAGTCTCATTTGCTCCATACCATTCAGGGACGTGTACAGACCTTCGTCACCACAACAAGTGT
TGAAGGCATCGATCACGCCACCTTGAAAGAAGCGGAAATTTTCAGAGTAGCCAGTGGAAAAGTAATTGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

83.198

99.73

0.83

Multiple sequence alignment