Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | R9A04_RS06200 | Genome accession | NZ_AP028402 |
| Coordinates | 1185899..1186849 (+) | Length | 316 a.a. |
| NCBI ID | WP_317729674.1 | Uniprot ID | - |
| Organism | Campylobacter jejuni strain BCH-11531 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1167065..1196955 | 1185899..1186849 | within | 0 |
Gene organization within MGE regions
Location: 1167065..1196955
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R9A04_RS06095 (B11531_12000) | pglI | 1167065..1167994 (-) | 930 | WP_002866141.1 | GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase | - |
| R9A04_RS06100 (B11531_12010) | pglH | 1167987..1169066 (-) | 1080 | WP_317729660.1 | GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase | - |
| R9A04_RS06105 (B11531_12020) | pglK | 1169063..1170757 (-) | 1695 | WP_317729661.1 | ABC-type lipopolysaccharide transporter PglK | - |
| R9A04_RS06110 (B11531_12030) | galE | 1170751..1171737 (-) | 987 | WP_306197866.1 | UDP-glucose 4-epimerase GalE | - |
| R9A04_RS06115 (B11531_12040) | - | 1171796..1172590 (-) | 795 | WP_317729662.1 | 3'-5' exonuclease | - |
| R9A04_RS06120 (B11531_12050) | waaC | 1172656..1173684 (+) | 1029 | WP_317729663.1 | lipopolysaccharide heptosyltransferase I | - |
| R9A04_RS06125 (B11531_12060) | htrB | 1173674..1174561 (+) | 888 | WP_317729664.1 | lipid A biosynthesis lauroyl acyltransferase HtrB | - |
| R9A04_RS06130 (B11531_12070) | - | 1174558..1175325 (+) | 768 | Protein_1184 | glycosyltransferase family 2 protein | - |
| R9A04_RS06135 (B11531_12080) | - | 1175318..1176379 (+) | 1062 | WP_317729665.1 | glycosyltransferase family 4 protein | - |
| R9A04_RS06140 (B11531_12090) | - | 1176376..1177239 (-) | 864 | WP_317729667.1 | glycosyltransferase family 2 protein | - |
| R9A04_RS06145 (B11531_12100) | - | 1177232..1178440 (-) | 1209 | WP_317729668.1 | glycosyltransferase family 2 protein | - |
| R9A04_RS06150 (B11531_12110) | - | 1178518..1179488 (-) | 971 | Protein_1188 | glycosyltransferase family 2 protein | - |
| R9A04_RS06160 (B11531_12130) | - | 1179577..1180452 (+) | 876 | WP_317729670.1 | alpha-2,3-sialyltransferase | - |
| R9A04_RS06165 (B11531_12140) | neuB | 1180453..1181493 (+) | 1041 | WP_032585995.1 | N-acetylneuraminate synthase | - |
| R9A04_RS06170 (B11531_12150) | neuC | 1181490..1182614 (+) | 1125 | WP_317729671.1 | UDP-N-acetylglucosamine 2-epimerase | - |
| R9A04_RS06175 (B11531_12160) | - | 1182607..1183224 (+) | 618 | WP_019260375.1 | glycosyltransferase | - |
| R9A04_RS06180 (B11531_12170) | - | 1183221..1183553 (+) | 333 | WP_019260376.1 | hypothetical protein | - |
| R9A04_RS06185 (B11531_12180) | - | 1183550..1184215 (+) | 666 | WP_317676758.1 | cytidylyltransferase domain-containing protein | - |
| R9A04_RS06190 (B11531_12190) | - | 1184203..1185036 (+) | 834 | WP_317729672.1 | CatB-related O-acetyltransferase | - |
| R9A04_RS06195 (B11531_12200) | waaV | 1185028..1185840 (-) | 813 | WP_317729673.1 | glycosyltransferase family 2 protein | - |
| R9A04_RS06200 (B11531_12210) | waaF | 1185899..1186849 (+) | 951 | WP_317729674.1 | glycosyltransferase family 9 protein | Regulator |
| R9A04_RS06205 (B11531_12220) | - | 1186835..1187599 (-) | 765 | WP_317729675.1 | glycosyltransferase family 25 protein | - |
| R9A04_RS06210 (B11531_12230) | gmhA | 1187599..1188159 (-) | 561 | WP_317729676.1 | D-sedoheptulose 7-phosphate isomerase | - |
| R9A04_RS06215 (B11531_12240) | rfaE1 | 1188156..1189541 (-) | 1386 | WP_317729677.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
| R9A04_RS06220 (B11531_12250) | rfaD | 1189534..1190487 (-) | 954 | WP_002872242.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| R9A04_RS06225 (B11531_12260) | gmhB | 1190488..1191049 (-) | 562 | Protein_1202 | D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase | - |
| R9A04_RS06230 (B11531_12270) | - | 1191130..1191432 (+) | 303 | WP_002852762.1 | c-type cytochrome | - |
| R9A04_RS06235 (B11531_12280) | ccoS | 1191455..1191661 (-) | 207 | WP_002852798.1 | cbb3-type cytochrome oxidase assembly protein CcoS | - |
| R9A04_RS06240 (B11531_12290) | - | 1191658..1194015 (-) | 2358 | WP_317648176.1 | heavy metal translocating P-type ATPase | - |
| R9A04_RS06245 (B11531_12300) | rho | 1194124..1195422 (+) | 1299 | WP_002852852.1 | transcription termination factor Rho | - |
| R9A04_RS06250 (B11531_12310) | dnaX | 1195426..1196955 (+) | 1530 | WP_002873531.1 | DNA polymerase III subunit gamma/tau | - |
Sequence
Protein
Download Length: 316 a.a. Molecular weight: 36221.78 Da Isoelectric Point: 10.2421
>NTDB_id=105498 R9A04_RS06200 WP_317729674.1 1185899..1186849(+) (waaF) [Campylobacter jejuni strain BCH-11531]
MKIFIHLPTWLGDAVMASPALYVIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLGIKAHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENATLVHLDLACMPCMQKTCPLKHHKCMKDLKPEVILKAIQNLINI
MKIFIHLPTWLGDAVMASPALYVIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLGIKAHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENATLVHLDLACMPCMQKTCPLKHHKCMKDLKPEVILKAIQNLINI
Nucleotide
Download Length: 951 bp
>NTDB_id=105498 R9A04_RS06200 WP_317729674.1 1185899..1186849(+) (waaF) [Campylobacter jejuni strain BCH-11531]
ATGAAAATTTTTATACATCTTCCCACTTGGCTGGGCGATGCGGTGATGGCTTCACCTGCTTTATACGTTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCCCGCTACAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTGGCATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCAAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGCCCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAATGCAACATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGTATGAAAGATTTAAAGCCTGAAGTGATTTTAAAAGCGATTCAAAATTTAATTAATATCTAA
ATGAAAATTTTTATACATCTTCCCACTTGGCTGGGCGATGCGGTGATGGCTTCACCTGCTTTATACGTTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCCCGCTACAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTGGCATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCAAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGCCCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAATGCAACATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGTATGAAAGATTTAAAGCCTGAAGTGATTTTAAAAGCGATTCAAAATTTAATTAATATCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
93.631 |
99.367 |
0.93 |