Detailed information NTG1054922

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BCS84_RS04040
• Genome accession: NZ_CP170046
• Coordinates: 819916..820896 (+)
• Length: 326 a.a.
• NCBI ID: WP_010435803.1
• Uniprot ID: A0AAN0N9Q1
• Organism: Vibrio cyclitrophicus strain 10N.222.45.E8
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 814916..825896

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BCS84_RS04010 (BCS84_04010)	ispD	815151..815852 (+)	702	WP_010435790.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
BCS84_RS04015 (BCS84_04015)	ispF	815855..816334 (+)	480	WP_010435793.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BCS84_RS04020 (BCS84_04020)	truD	816357..817403 (+)	1047	WP_010435794.1	tRNA pseudouridine(13) synthase TruD	-
BCS84_RS04025 (BCS84_04025)	surE	817479..818222 (+)	744	WP_010435796.1	5'/3'-nucleotidase SurE	-
BCS84_RS04030 (BCS84_04030)	-	818223..818849 (+)	627	WP_010435798.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
BCS84_RS04035 (BCS84_04035)	nlpD	818885..819817 (+)	933	WP_016768192.1	murein hydrolase activator NlpD	-
BCS84_RS04040 (BCS84_04040)	rpoS	819916..820896 (+)	981	WP_010435803.1	RNA polymerase sigma factor RpoS	Regulator
BCS84_RS04045 (BCS84_04045)	mutS	821006..823567 (-)	2562	WP_016768193.1	DNA mismatch repair protein MutS	-
BCS84_RS04050 (BCS84_04050)	pncC	823691..824185 (+)	495	WP_016768194.1	nicotinamide-nucleotide amidase	-
BCS84_RS04055 (BCS84_04055)	recA	824325..825365 (+)	1041	WP_010435812.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 37267.52 Da
• Isoelectric Point: 5.2707

>NTDB_id=1054922 BCS84_RS04040 WP_010435803.1 819916..820896(+) (rpoS) [Vibrio cyclitrophicus strain 10N.222.45.E8]
MSISNAVTKEEFDLNQVTTESETLGKAKRTVTKKTEAKEEAEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIATKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDSDIKNSLIFWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREICLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide

• Length: 981 bp

>NTDB_id=1054922 BCS84_RS04040 WP_010435803.1 819916..820896(+) (rpoS) [Vibrio cyclitrophicus strain 10N.222.45.E8]
ATGAGTATAAGCAATGCAGTAACCAAAGAAGAGTTCGATCTTAACCAAGTAACCACGGAATCGGAAACACTTGGAAAAGC
AAAACGAACAGTCACTAAGAAAACCGAAGCGAAAGAAGAAGCTGAAGTTACGTCTAAAAGTTTAGATGCTACTCAACTCT
ACTTAGGCGAAATTGGTTTCTCACCACTACTAACCGCTGAAGAAGAAGTGCTTTATGCACGTCGAGCTCTACGCGGTGAT
GAAGCGGCCCGCAAACGCATGATTGAAAGTAACCTGCGTTTGGTGGTTAAAATATCTCGTCGTTATAGCAACCGTGGTTT
GGCACTTCTCGATCTAATTGAAGAAGGCAACCTAGGCTTGATTCGCGCCGTAGAGAAGTTTGACCCAGAGCGAGGTTTCC
GCTTTTCAACTTACGCGACATGGTGGATTCGTCAAACCATTGAACGTGCTTTAATGAATCAGACTCGCACCATCCGTTTG
CCAATCCATGTTGTGAAAGAGCTGAACATCTACCTACGTACAGCAAGAGAGTTATCACAAAAGCTTGACCATGAACCAAC
GGCTGAAGAAATTGCTACTAAGCTAGACAAGCCAGTTGGTGATGTGAGCAAGATGCTTCGTTTAAACGAGCGAGTGAGCT
CCGTTGATACGCCAATTGGTGGTGACGGTGAGAAAGCACTGTTGGATATTATTCCGGACATCAACAATTCCGATCCTGAG
GTTTCAACTCAAGATAGCGATATCAAGAACTCGTTGATTTTCTGGCTAGATGAGCTGAACCCGAAACAGAAAGAGGTGCT
TGCACGTCGCTTTGGACTACTTGGCTATGAACCGTCAACGTTAGAAGAAGTAGGCCGTGAAATCTGCCTGACTCGTGAAC
GTGTTCGTCAAATCCAAGTTGAAGGTCTTCGCCGTCTACGAGAGATTCTGATCAAGCAAGGTCTGAACATGGAAAACCTG
TTTAACGTTGAAAACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (49-82)

• Sigma-70 region 2 (Sigma70_r2) (87-156)

• Sigma-70, region 4 (Sigma70_r4) (255-308)

• Sigma-70 region 3 (Sigma70_r3) (167-240)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.437	100	0.834