Detailed information NTG1054895

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: BCT18_RS11105
• Genome accession: NZ_CP170034
• Coordinates: 2386153..2387232 (-)
• Length: 359 a.a.
• NCBI ID: WP_412495366.1
• Uniprot ID: -
• Organism: Vibrio cyclitrophicus strain 10N.222.54.F11
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2381153..2392232

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BCT18_RS11075 (BCT18_11075)	-	2381345..2381998 (+)	654	WP_010441236.1	thiopurine S-methyltransferase	-
BCT18_RS11080 (BCT18_11080)	purT	2382130..2383305 (-)	1176	WP_010441234.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
BCT18_RS11085 (BCT18_11085)	cdd	2383472..2384359 (-)	888	WP_010441232.1	cytidine deaminase	-
BCT18_RS11090 (BCT18_11090)	-	2384730..2385407 (-)	678	WP_010441230.1	LrgB family protein	-
BCT18_RS11095 (BCT18_11095)	-	2385410..2385781 (-)	372	WP_010441228.1	CidA/LrgA family protein	-
BCT18_RS11100 (BCT18_11100)	sbcB	2385807..2386187 (-)	381	WP_412495365.1	hypothetical protein	Machinery gene
BCT18_RS11105 (BCT18_11105)	sbcB	2386153..2387232 (-)	1080	WP_412495366.1	exodeoxyribonuclease I	Machinery gene
BCT18_RS11110 (BCT18_11110)	-	2388203..2388637 (+)	435	WP_010441224.1	DUF4402 domain-containing protein	-
BCT18_RS11115 (BCT18_11115)	-	2388691..2389128 (+)	438	WP_016786202.1	DUF4402 domain-containing protein	-
BCT18_RS11120 (BCT18_11120)	-	2389125..2389835 (+)	711	WP_010441221.1	molecular chaperone	-

Sequence

Protein

• Length: 359 a.a.
• Molecular weight: 41026.83 Da
• Isoelectric Point: 6.3115

>NTDB_id=1054895 BCT18_RS11105 WP_412495366.1 2386153..2387232(-) (sbcB) [Vibrio cyclitrophicus strain 10N.222.54.F11]
MSSDNQPTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNVIGEPLVIYCQPPADYLPAPEAALITRITPQKAMSQGLPEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRAVHALRPEGIVWPENEEGYP
SFKLEHLSVANGIEHENAHDAMADVIATIELAKKLKAAQPKMFDYLYSMRHKRKLNELVDIVNMTPLMHVSGMFGRDCNY
TSWIVPMAWHPTNQNAVIVVDLAKDPSPLLELDSDALRERLYTKRSELGEDELPVPIKLVQLNKCPILAPAKTLTAENAE
TIGIDRQQCLKKLSAITRTPRDPRKTDRFVFTRTRIREK

Nucleotide

• Length: 1080 bp

>NTDB_id=1054895 BCT18_RS11105 WP_412495366.1 2386153..2387232(-) (sbcB) [Vibrio cyclitrophicus strain 10N.222.54.F11]
ATGAGTTCAGATAATCAGCCAACCTATTTCTTTTTCGATTACGAAACGTGGGGCGTCAGCCCAGCGAAAGATCGCCCGAG
TCAGTTCGCCGGTGTTCGTACCGACCAAGATTTCAACGTTATCGGAGAGCCATTGGTCATCTATTGCCAACCTCCTGCTG
ATTACTTACCAGCGCCGGAAGCTGCACTCATTACTCGCATTACACCTCAAAAAGCGATGTCTCAAGGCTTACCTGAACCT
GAATTTATCGCGAAGATCCACGCAGAGCTTGCTAAGCCGAACACAACTAGCCTTGGCTACAACAGCATTCGATTCGACGA
CGAAGTAACACGCTATACCTGTTACCGTAATTTCATCGATCCATATGCATGGAGCTGGCAGAACGGCAACTCTCGTTGGG
ATCTACTCGACGTGATGCGCGCGGTACATGCACTTCGCCCTGAAGGTATTGTTTGGCCAGAGAATGAAGAAGGTTACCCA
AGCTTCAAACTGGAACATTTGTCAGTGGCAAATGGCATTGAACACGAAAACGCGCACGATGCGATGGCCGATGTTATTGC
TACCATTGAATTAGCAAAGAAGTTGAAGGCTGCACAGCCTAAAATGTTTGATTACCTTTACAGCATGCGTCACAAACGCA
AATTGAATGAGTTAGTTGACATTGTAAACATGACGCCTTTAATGCACGTTTCAGGCATGTTTGGTCGTGATTGTAATTAC
ACGAGTTGGATTGTGCCGATGGCTTGGCACCCAACCAACCAAAATGCGGTTATCGTAGTCGACTTAGCCAAAGATCCTAG
CCCGCTGCTGGAGCTTGATTCTGACGCCCTCCGTGAAAGGCTCTACACTAAACGCAGTGAACTTGGCGAAGACGAGTTAC
CCGTACCCATCAAATTGGTTCAACTGAACAAGTGCCCTATTCTCGCACCCGCCAAAACTCTGACGGCTGAAAATGCGGAA
ACGATAGGTATCGATCGCCAACAGTGCTTAAAGAAACTTAGCGCTATTACGCGAACACCCAGAGATCCGCGAAAAACTGA
TCGGTTTGTATTCACAAGAACGCGAATACGAGAAAAGTGA

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (11-191)

• Exonuclease C-terminal (Exonuc_X-T_C) (210-353)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	78.592	98.886	0.777