Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   ACNUEH_RS00620 Genome accession   NZ_OZ197095
Coordinates   137072..137434 (-) Length   120 a.a.
NCBI ID   WP_000101096.1    Uniprot ID   A0ABN3ANQ3
Organism   Acinetobacter baumannii isolate 23S01404-6     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 132072..142434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUEH_RS00610 - 134351..136429 (-) 2079 WP_024438034.1 methyl-accepting chemotaxis protein -
  ACNUEH_RS00615 - 136476..137011 (-) 536 Protein_115 chemotaxis protein CheW -
  ACNUEH_RS00620 pilH 137072..137434 (-) 363 WP_000101096.1 response regulator Machinery gene
  ACNUEH_RS00625 pilG 137458..137841 (-) 384 WP_024438036.1 twitching motility response regulator PilG Regulator
  ACNUEH_RS00630 - 138124..138762 (+) 639 WP_002027721.1 hypothetical protein -
  ACNUEH_RS00635 - 138822..139940 (+) 1119 WP_057065445.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13479.47 Da        Isoelectric Point: 4.9102

>NTDB_id=1054869 ACNUEH_RS00620 WP_000101096.1 137072..137434(-) (pilH) [Acinetobacter baumannii isolate 23S01404-6]
MARILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVI
VSTKDQATDRVWGKRQGAIDYLIKPIEEKQLIDVIKQFLN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=1054869 ACNUEH_RS00620 WP_000101096.1 137072..137434(-) (pilH) [Acinetobacter baumannii isolate 23S01404-6]
ATGGCACGTATTCTCATTGTTGATGACTCACCAACAGAAACTTTTCGTTTTAAAGAAATCCTAACTAAGCATGGCTATGA
CGTACTTGAAGCATCTAACGGTGCCGATGGTGTGACTTTGGCAAAAGCTGAGCAGCCTGACCTGGTATTAATGGATGTGG
TCATGCCAGGTGTAAATGGTTTTCAGGCAACGCGCCAGATTACCCGTGATGAAGACACGAAGCATATTCCAGTGGTGATT
GTGAGTACTAAAGATCAGGCAACTGACCGAGTATGGGGTAAACGTCAAGGCGCAATCGATTACTTAATCAAGCCAATCGA
AGAAAAGCAATTAATTGATGTAATTAAACAATTTCTAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

39.496

99.167

0.392