Detailed information NTG1054868

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BCT18_RS01520
• Genome accession: NZ_CP170034
• Coordinates: 331464..332444 (-)
• Length: 326 a.a.
• NCBI ID: WP_010435803.1
• Uniprot ID: A0AAN0N9Q1
• Organism: Vibrio cyclitrophicus strain 10N.222.54.F11
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 326464..337444

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BCT18_RS01505 (BCT18_01505)	recA	326995..328035 (-)	1041	WP_010435812.1	recombinase RecA	Machinery gene
BCT18_RS01510 (BCT18_01510)	pncC	328175..328669 (-)	495	WP_016768194.1	nicotinamide-nucleotide amidase	-
BCT18_RS01515 (BCT18_01515)	mutS	328793..331354 (+)	2562	WP_102277673.1	DNA mismatch repair protein MutS	-
BCT18_RS01520 (BCT18_01520)	rpoS	331464..332444 (-)	981	WP_010435803.1	RNA polymerase sigma factor RpoS	Regulator
BCT18_RS01525 (BCT18_01525)	nlpD	332543..333475 (-)	933	WP_016768192.1	murein hydrolase activator NlpD	-
BCT18_RS01530 (BCT18_01530)	-	333511..334137 (-)	627	WP_010435798.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
BCT18_RS01535 (BCT18_01535)	surE	334138..334881 (-)	744	WP_010435796.1	5'/3'-nucleotidase SurE	-
BCT18_RS01540 (BCT18_01540)	truD	334957..336003 (-)	1047	WP_010435794.1	tRNA pseudouridine(13) synthase TruD	-
BCT18_RS01545 (BCT18_01545)	ispF	336026..336505 (-)	480	WP_010435793.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BCT18_RS01550 (BCT18_01550)	ispD	336508..337209 (-)	702	WP_010435790.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 37267.52 Da
• Isoelectric Point: 5.2707

>NTDB_id=1054868 BCT18_RS01520 WP_010435803.1 331464..332444(-) (rpoS) [Vibrio cyclitrophicus strain 10N.222.54.F11]
MSISNAVTKEEFDLNQVTTESETLGKAKRTVTKKTEAKEEAEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIATKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDSDIKNSLIFWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREICLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide

• Length: 981 bp

>NTDB_id=1054868 BCT18_RS01520 WP_010435803.1 331464..332444(-) (rpoS) [Vibrio cyclitrophicus strain 10N.222.54.F11]
ATGAGTATAAGCAATGCAGTAACCAAAGAAGAGTTCGATCTTAACCAAGTAACCACGGAATCGGAAACACTTGGAAAAGC
AAAACGAACAGTCACTAAGAAAACCGAAGCGAAAGAAGAAGCTGAAGTTACGTCTAAAAGTTTAGATGCTACTCAACTCT
ACTTAGGCGAAATTGGTTTCTCACCACTACTAACCGCTGAAGAAGAAGTGCTTTATGCACGTCGAGCTCTACGCGGTGAT
GAAGCGGCCCGCAAACGCATGATTGAAAGTAACCTGCGTTTGGTGGTTAAAATATCTCGTCGTTATAGCAACCGTGGTTT
GGCACTTCTCGATCTAATTGAAGAAGGCAACCTAGGCTTGATTCGCGCCGTAGAGAAGTTTGACCCAGAGCGAGGTTTCC
GCTTTTCAACTTACGCGACATGGTGGATTCGTCAAACCATTGAACGTGCTTTAATGAATCAGACTCGCACCATCCGTTTG
CCAATCCATGTTGTGAAAGAGCTGAACATCTACCTACGTACAGCAAGAGAGTTATCACAAAAGCTTGACCATGAACCAAC
GGCTGAAGAAATTGCTACTAAGCTAGACAAGCCAGTTGGTGATGTGAGCAAGATGCTTCGTTTAAACGAGCGAGTGAGCT
CCGTTGATACGCCAATTGGTGGTGACGGTGAGAAAGCACTGTTGGATATTATTCCGGACATCAACAATTCCGATCCTGAG
GTTTCAACTCAAGATAGCGATATCAAGAACTCGTTGATTTTCTGGCTAGATGAGCTGAACCCGAAACAGAAAGAGGTGCT
TGCACGTCGCTTTGGACTACTTGGCTATGAACCGTCAACGTTAGAAGAAGTAGGCCGTGAAATCTGCCTGACTCGTGAAC
GTGTTCGTCAAATCCAAGTTGAAGGTCTTCGCCGTCTACGAGAGATTCTGATCAAGCAAGGTCTGAACATGGAAAACCTG
TTTAACGTTGAAAACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (49-82)

• Sigma-70 region 2 (Sigma70_r2) (87-156)

• Sigma-70, region 4 (Sigma70_r4) (255-308)

• Sigma-70 region 3 (Sigma70_r3) (167-240)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.437	100	0.834