Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   BCT87_RS13235 Genome accession   NZ_CP170031
Coordinates   2955813..2956994 (-) Length   393 a.a.
NCBI ID   WP_016788746.1    Uniprot ID   -
Organism   Vibrio cyclitrophicus strain 10N.261.52.C4     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2950813..2961994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCT87_RS13220 (BCT87_13220) - 2951852..2952754 (+) 903 WP_016768008.1 Vmh family MBL fold metallo-hydrolase -
  BCT87_RS13225 (BCT87_13225) - 2953072..2953287 (+) 216 WP_016798712.1 hypothetical protein -
  BCT87_RS13230 (BCT87_13230) - 2953643..2955691 (+) 2049 WP_016793555.1 hybrid sensor histidine kinase/response regulator -
  BCT87_RS13235 (BCT87_13235) cqsA 2955813..2956994 (-) 1182 WP_016788746.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  BCT87_RS13240 (BCT87_13240) - 2957203..2958600 (-) 1398 WP_016793554.1 PLP-dependent aminotransferase family protein -
  BCT87_RS13245 (BCT87_13245) - 2958705..2959601 (+) 897 WP_010441252.1 EamA family transporter -
  BCT87_RS13250 (BCT87_13250) - 2959849..2960781 (+) 933 WP_016768014.1 aspartoacylase -
  BCT87_RS13255 (BCT87_13255) - 2960910..2961923 (-) 1014 WP_016784524.1 CobW family GTP-binding protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43763.71 Da        Isoelectric Point: 6.1431

>NTDB_id=1054852 BCT87_RS13235 WP_016788746.1 2955813..2956994(-) (cqsA) [Vibrio cyclitrophicus strain 10N.261.52.C4]
MSDKSKNKPLPSFIEERLNFYIQDLITQNESQKHLVLGSHPSHDAVVMQSNDYLSLSHNEQIQKAHRDAISQHDDNVVMS
AIFLQDEQSKPAFETDLANFMGMESCLLSQSGWAANIGLLQTICPPNMPVYIDFFAHMSLWEGIRAAGATGHPFMHNNMN
HLRKQIQRYGSGVIVVDSVYSTIGTVAPLRDIYEMAQEFDCALVVDESHSLGTHGSNGAGLVQALGLTNKVDFITVSLAK
TFAYRAGAILGPKRLSETLPFVAYPAIFSSTVLPQEVIRLEKTLEVIKASDDKRDTLFKRAKALTTGLKRIGFNIRSESQ
IVALECGSESNTERVRDFLEERDVFGAVFCRPATGRNKNIIRFSINADMTPRDIDHVLTACQEAFNHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=1054852 BCT87_RS13235 WP_016788746.1 2955813..2956994(-) (cqsA) [Vibrio cyclitrophicus strain 10N.261.52.C4]
ATGAGTGATAAATCTAAAAACAAACCACTACCTTCCTTTATTGAAGAACGCTTGAACTTTTATATTCAAGATCTCATTAC
ACAAAACGAAAGCCAAAAACATTTGGTATTGGGGAGTCACCCCAGCCATGACGCAGTGGTAATGCAAAGCAACGATTACC
TATCTTTGTCGCACAATGAACAAATCCAGAAAGCACATCGGGACGCAATTTCACAACACGATGACAATGTGGTGATGTCT
GCCATCTTCTTACAAGATGAACAGTCGAAACCTGCATTTGAAACCGATCTGGCTAACTTTATGGGAATGGAAAGCTGCTT
GCTCTCTCAATCAGGTTGGGCGGCTAACATTGGCTTATTGCAAACGATCTGCCCTCCTAATATGCCTGTGTATATCGATT
TTTTTGCACACATGTCCCTATGGGAGGGTATTCGTGCCGCTGGTGCAACTGGCCACCCATTTATGCACAACAACATGAAT
CACCTTCGTAAACAGATTCAACGTTATGGTTCGGGTGTGATTGTAGTCGACTCGGTTTACAGCACCATAGGTACGGTAGC
CCCACTCCGCGACATCTACGAAATGGCGCAAGAGTTTGACTGTGCCTTGGTCGTCGATGAATCCCATTCACTAGGCACTC
ATGGTTCAAATGGTGCTGGTTTGGTTCAGGCATTAGGGCTGACTAACAAAGTGGATTTCATTACCGTCAGCTTGGCCAAA
ACCTTTGCCTATCGCGCTGGCGCTATACTCGGCCCTAAGCGATTATCGGAGACATTACCCTTTGTCGCTTACCCTGCTAT
TTTTAGCTCGACCGTACTACCACAAGAAGTTATCCGCTTAGAAAAGACTTTAGAGGTTATTAAAGCCTCTGATGATAAGC
GAGACACCTTGTTCAAACGCGCTAAAGCACTGACTACAGGGCTAAAGCGAATCGGTTTTAACATTCGCAGTGAATCTCAG
ATTGTGGCATTAGAATGTGGCAGTGAAAGCAACACTGAGCGTGTACGTGACTTCTTAGAAGAGCGTGACGTGTTTGGTGC
GGTATTTTGTCGGCCAGCAACAGGAAGAAACAAAAACATCATCCGCTTTTCGATTAACGCAGACATGACGCCGCGGGACA
TCGACCATGTTCTCACAGCATGCCAAGAGGCTTTTAATCACCCTGACTTAGAGTTCGTATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

55.556

98.473

0.547

Multiple sequence alignment