Detailed information NTG1054836

Bioinformatically predicted

Overview

• Name: pilM
• Type: Machinery gene
• Locus tag: BCT87_RS05555
• Genome accession: NZ_CP170031
• Coordinates: 1259314..1260339 (-)
• Length: 341 a.a.
• NCBI ID: WP_016767986.1
• Uniprot ID: -
• Organism: Vibrio cyclitrophicus strain 10N.261.52.C4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1254314..1265339

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BCT87_RS05530 (BCT87_05530)	aroK	1255143..1255661 (-)	519	WP_009848907.1	shikimate kinase AroK	-
BCT87_RS05535 (BCT87_05535)	pilQ	1255838..1257529 (-)	1692	WP_010435279.1	type IV pilus secretin PilQ	Machinery gene
BCT87_RS05540 (BCT87_05540)	pilP	1257589..1258107 (-)	519	WP_016767989.1	pilus assembly protein PilP	Machinery gene
BCT87_RS05545 (BCT87_05545)	pilO	1258094..1258723 (-)	630	WP_010435284.1	type 4a pilus biogenesis protein PilO	Machinery gene
BCT87_RS05550 (BCT87_05550)	pilN	1258716..1259330 (-)	615	WP_010435288.1	PilN domain-containing protein	Machinery gene
BCT87_RS05555 (BCT87_05555)	pilM	1259314..1260339 (-)	1026	WP_016767986.1	type IV pilus assembly protein PilM	Machinery gene
BCT87_RS05560 (BCT87_05560)	-	1260491..1263049 (+)	2559	WP_010435294.1	penicillin-binding protein 1A	-
BCT87_RS05565 (BCT87_05565)	oxyR	1263145..1264038 (-)	894	WP_010435297.1	DNA-binding transcriptional regulator OxyR	-
BCT87_RS05570 (BCT87_05570)	-	1264260..1264988 (+)	729	WP_010435300.1	glutathione peroxidase	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 38112.77 Da
• Isoelectric Point: 6.8348

>NTDB_id=1054836 BCT87_RS05555 WP_016767986.1 1259314..1260339(-) (pilM) [Vibrio cyclitrophicus strain 10N.261.52.C4]
MGSSLITGIDINHHSIKAVVLKPVGESYALVGYKELPISDDIFTANHTLEYQKTVKKLKELRKGLPFGSRNVAISVPDNT
VISKVLQIESELEDREKEFSIYQTFAHQSPFPIEELSLDFVKLEDKRFGKGATSSYQVYATRKEVVDSRADALTKAGFKP
IVVDTQAHGLLNIWQLASHLYPEKKNWLLVDVGVDQTSLGIIPQGSAPFYKDIAFGIQDLCSTGNSMDMEGGFSNVEEKH
KFIVNLIEKLKRQLQLYSSVNALQPISGIWLMGEGASMPMVVEELERHFQLSCESLNPLSLFENKVAKKRRLPMDWQHFG
IAAGMAMSGLKWQGEKHVASN

Nucleotide

• Length: 1026 bp

>NTDB_id=1054836 BCT87_RS05555 WP_016767986.1 1259314..1260339(-) (pilM) [Vibrio cyclitrophicus strain 10N.261.52.C4]
ATGGGTTCATCATTAATTACAGGTATAGATATAAATCACCACAGCATCAAAGCCGTGGTACTAAAACCCGTTGGGGAGTC
GTATGCCCTGGTGGGATACAAAGAGCTGCCGATTTCGGACGACATTTTTACAGCTAACCATACTTTGGAGTATCAGAAAA
CTGTTAAGAAACTCAAAGAACTTAGGAAAGGGCTGCCTTTTGGAAGCCGCAACGTCGCTATTTCGGTACCGGATAACACG
GTGATCAGCAAAGTACTGCAAATAGAGAGCGAATTAGAAGATAGAGAAAAGGAGTTCTCGATCTATCAAACCTTTGCTCA
TCAATCTCCCTTTCCTATCGAGGAGCTGAGTTTAGATTTTGTAAAGCTAGAAGACAAACGATTTGGTAAAGGAGCAACAA
GCAGCTATCAAGTGTATGCGACTCGTAAAGAGGTGGTTGATAGCCGAGCTGACGCGCTAACGAAAGCAGGGTTTAAGCCC
ATCGTTGTCGACACTCAGGCCCATGGTTTACTCAACATTTGGCAATTGGCTTCGCATTTGTATCCAGAAAAAAAGAATTG
GCTGTTGGTGGATGTTGGCGTTGATCAAACTTCATTAGGCATTATTCCCCAAGGTTCAGCGCCATTTTATAAAGATATTG
CCTTTGGCATTCAAGATCTTTGCAGTACGGGTAACTCGATGGATATGGAGGGTGGGTTTAGTAACGTTGAGGAGAAGCAT
AAGTTTATTGTCAATTTGATTGAAAAACTCAAGCGTCAGTTACAGCTCTATTCATCGGTCAATGCGCTTCAACCTATCTC
AGGAATTTGGCTAATGGGCGAAGGAGCAAGTATGCCGATGGTCGTTGAAGAGTTAGAGCGACATTTTCAGTTAAGTTGTG
AGTCTTTGAACCCCCTATCTTTGTTTGAGAATAAGGTCGCGAAAAAACGTCGATTACCCATGGATTGGCAACATTTTGGT
ATTGCAGCAGGCATGGCGATGAGTGGACTCAAGTGGCAGGGAGAAAAGCATGTTGCATCAAATTAA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (8-220)

• Type IV pilus assembly protein PilM; (PilM_2) (242-328)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilM	Vibrio cholerae strain A1552	53.097	99.413	0.528
pilM	Vibrio campbellii strain DS40M4	47.661	100	0.478