Detailed information NTG1054798

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BCU15_RS12855
• Genome accession: NZ_CP170028
• Coordinates: 2916644..2917624 (-)
• Length: 326 a.a.
• NCBI ID: WP_010435803.1
• Uniprot ID: A0AAN0N9Q1
• Organism: Vibrio cyclitrophicus strain 10N.261.55.B9
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2911644..2922624

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BCU15_RS12840 (BCU15_12840)	recA	2912175..2913215 (-)	1041	WP_010435812.1	recombinase RecA	Machinery gene
BCU15_RS12845 (BCU15_12845)	pncC	2913355..2913849 (-)	495	WP_016768194.1	nicotinamide-nucleotide amidase	-
BCU15_RS12850 (BCU15_12850)	mutS	2913973..2916534 (+)	2562	WP_016768193.1	DNA mismatch repair protein MutS	-
BCU15_RS12855 (BCU15_12855)	rpoS	2916644..2917624 (-)	981	WP_010435803.1	RNA polymerase sigma factor RpoS	Regulator
BCU15_RS12860 (BCU15_12860)	nlpD	2917723..2918655 (-)	933	WP_016768192.1	murein hydrolase activator NlpD	-
BCU15_RS12865 (BCU15_12865)	-	2918691..2919317 (-)	627	WP_010435798.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
BCU15_RS12870 (BCU15_12870)	surE	2919318..2920061 (-)	744	WP_010435796.1	5'/3'-nucleotidase SurE	-
BCU15_RS12875 (BCU15_12875)	truD	2920137..2921183 (-)	1047	WP_010435794.1	tRNA pseudouridine(13) synthase TruD	-
BCU15_RS12880 (BCU15_12880)	ispF	2921206..2921685 (-)	480	WP_010435793.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BCU15_RS12885 (BCU15_12885)	ispD	2921688..2922389 (-)	702	WP_010435790.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 37267.52 Da
• Isoelectric Point: 5.2707

>NTDB_id=1054798 BCU15_RS12855 WP_010435803.1 2916644..2917624(-) (rpoS) [Vibrio cyclitrophicus strain 10N.261.55.B9]
MSISNAVTKEEFDLNQVTTESETLGKAKRTVTKKTEAKEEAEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIATKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDSDIKNSLIFWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREICLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide

• Length: 981 bp

>NTDB_id=1054798 BCU15_RS12855 WP_010435803.1 2916644..2917624(-) (rpoS) [Vibrio cyclitrophicus strain 10N.261.55.B9]
ATGAGTATAAGCAATGCAGTAACCAAAGAAGAGTTCGATCTTAACCAAGTAACCACGGAATCGGAAACACTTGGAAAAGC
AAAACGAACAGTCACTAAGAAAACCGAAGCGAAAGAAGAAGCTGAAGTTACGTCTAAAAGTTTAGATGCTACTCAACTCT
ACTTAGGCGAAATTGGTTTCTCACCACTACTAACCGCTGAAGAAGAAGTGCTTTATGCACGTCGAGCTCTACGCGGTGAT
GAAGCGGCCCGCAAACGCATGATTGAAAGTAACCTGCGTTTGGTGGTTAAAATATCTCGTCGTTATAGCAACCGTGGTTT
GGCACTTCTCGATCTAATTGAAGAAGGCAACCTAGGCTTGATTCGCGCCGTAGAGAAGTTTGACCCAGAGCGAGGTTTCC
GCTTTTCAACTTACGCGACATGGTGGATTCGTCAAACCATTGAACGTGCTTTAATGAATCAGACTCGCACCATCCGTTTG
CCAATCCATGTTGTGAAAGAGCTGAACATCTACCTACGTACAGCAAGAGAGTTATCACAAAAGCTTGACCATGAACCAAC
GGCTGAAGAAATTGCTACTAAGCTAGACAAGCCAGTTGGTGATGTGAGCAAGATGCTTCGTTTAAACGAGCGAGTGAGCT
CCGTTGATACGCCAATTGGTGGTGACGGTGAGAAAGCACTGTTGGATATTATTCCGGACATCAACAATTCCGATCCTGAG
GTTTCAACTCAAGATAGCGATATCAAGAACTCGTTGATTTTCTGGCTAGATGAGCTGAACCCGAAACAGAAAGAGGTGCT
TGCACGTCGCTTTGGACTACTTGGCTATGAACCGTCAACGTTAGAAGAAGTAGGCCGTGAAATCTGCCTGACTCGTGAAC
GTGTTCGTCAAATCCAAGTTGAAGGTCTTCGCCGTCTACGAGAGATTCTGATCAAGCAAGGTCTGAACATGGAAAACCTG
TTTAACGTTGAAAACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (49-82)

• Sigma-70 region 2 (Sigma70_r2) (87-156)

• Sigma-70, region 4 (Sigma70_r4) (255-308)

• Sigma-70 region 3 (Sigma70_r3) (167-240)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.437	100	0.834