Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   BCU15_RS07050 Genome accession   NZ_CP170028
Coordinates   1556159..1557340 (-) Length   393 a.a.
NCBI ID   WP_102341259.1    Uniprot ID   -
Organism   Vibrio cyclitrophicus strain 10N.261.55.B9     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1551159..1562340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCU15_RS07035 (BCU15_07035) - 1552197..1553099 (+) 903 WP_010441258.1 Vmh family MBL fold metallo-hydrolase -
  BCU15_RS07040 (BCU15_07040) - 1553418..1553633 (+) 216 WP_016798712.1 hypothetical protein -
  BCU15_RS07045 (BCU15_07045) - 1553989..1556037 (+) 2049 WP_016768011.1 hybrid sensor histidine kinase/response regulator -
  BCU15_RS07050 (BCU15_07050) cqsA 1556159..1557340 (-) 1182 WP_102341259.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  BCU15_RS07055 (BCU15_07055) - 1557549..1558946 (-) 1398 WP_016793554.1 PLP-dependent aminotransferase family protein -
  BCU15_RS07060 (BCU15_07060) - 1559051..1559947 (+) 897 WP_010441252.1 EamA family transporter -
  BCU15_RS07065 (BCU15_07065) - 1560195..1561127 (+) 933 WP_010441251.1 aspartoacylase -
  BCU15_RS07070 (BCU15_07070) - 1561256..1562275 (-) 1020 WP_010441249.1 CobW family GTP-binding protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43777.74 Da        Isoelectric Point: 6.1436

>NTDB_id=1054782 BCU15_RS07050 WP_102341259.1 1556159..1557340(-) (cqsA) [Vibrio cyclitrophicus strain 10N.261.55.B9]
MSDKSKNKPLPSFIEERLNFYIQDLITQNESQKHLVLGSHPSHDAVVMQSNDYLSLSHNEQIQKAHRDAISQHDDNVVMS
AIFLQDEQSKPAFETDLANFMGMESCLLSQSGWAANIGLLQTICPPNMPVYIDFFAHMSLWEGIRAAGATGHPFMHNNMN
HLRKQIQRYGSGVIVVDSVYSTIGTVAPLRDIYEMAQEFECALVVDESHSLGTHGSNGAGLVQALGLTNKVDFITVSLAK
TFAYRAGAILGPKRLSETLPFVAYPAIFSSTVLPQEVIRLEKTLEVIKASDDKRDTLFKRAKALTTGLKRIGFNIRSESQ
IVALECGSESNTERVRDFLEERDVFGAVFCRPATGRNKNIIRFSINADMTPRDIDHVLTACQEAFNHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=1054782 BCU15_RS07050 WP_102341259.1 1556159..1557340(-) (cqsA) [Vibrio cyclitrophicus strain 10N.261.55.B9]
ATGAGTGATAAATCTAAAAACAAACCACTACCTTCCTTTATTGAAGAACGCTTGAACTTCTATATTCAAGATCTCATTAC
ACAAAACGAAAGCCAAAAACATTTGGTATTGGGGAGTCACCCCAGCCATGACGCAGTGGTAATGCAAAGCAACGATTACC
TATCTTTGTCGCACAATGAACAAATCCAGAAAGCACATCGGGACGCAATTTCACAACACGATGACAATGTGGTGATGTCT
GCCATCTTCTTACAAGATGAACAGTCGAAACCTGCATTTGAAACCGATCTGGCTAACTTTATGGGAATGGAAAGCTGCTT
ACTCTCTCAATCAGGTTGGGCGGCTAACATTGGCTTATTGCAAACGATCTGCCCTCCTAATATGCCTGTGTATATCGATT
TTTTTGCACACATGTCCCTATGGGAGGGTATTCGTGCCGCTGGTGCAACTGGCCACCCATTTATGCACAACAACATGAAT
CACCTTCGTAAACAGATTCAGCGTTATGGTTCGGGTGTGATTGTAGTCGACTCGGTTTACAGCACCATAGGTACGGTAGC
CCCACTCCGCGACATCTACGAAATGGCGCAAGAGTTTGAATGTGCCTTGGTCGTCGATGAATCCCATTCACTAGGCACTC
ATGGTTCAAATGGTGCTGGTTTGGTTCAGGCATTAGGGCTGACTAACAAAGTGGATTTCATTACCGTCAGCTTGGCCAAA
ACCTTTGCCTATCGCGCTGGCGCTATACTCGGACCTAAGCGATTATCGGAGACATTACCCTTTGTCGCTTACCCTGCTAT
TTTTAGCTCGACCGTACTACCACAAGAAGTTATCCGCTTAGAAAAGACTTTAGAGGTTATTAAAGCCTCTGATGATAAGC
GAGACACCTTGTTCAAACGCGCTAAAGCACTGACTACAGGGCTAAAGCGAATCGGTTTTAACATTCGCAGTGAATCTCAG
ATTGTGGCATTAGAATGTGGCAGTGAAAGCAACACTGAGCGTGTACGTGACTTCTTAGAAGAGCGTGACGTGTTTGGTGC
GGTATTTTGTAGGCCAGCAACAGGAAGAAACAAAAACATCATCCGCTTTTCGATTAACGCAGACATGACGCCGCGGGACA
TCGACCATGTTCTCACAGCATGCCAAGAGGCTTTTAATCACCCTGACTTAGAGTTCGTATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

55.556

98.473

0.547

Multiple sequence alignment