Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   R8588_RS07290 Genome accession   NZ_AP028401
Coordinates   1410751..1411932 (-) Length   393 a.a.
NCBI ID   WP_002868229.1    Uniprot ID   A0AB36G5F3
Organism   Campylobacter jejuni strain BCH-11527     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1405751..1416932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8588_RS07260 (B11527_14340) - 1406295..1406636 (+) 342 WP_002784057.1 hypothetical protein -
  R8588_RS07265 (B11527_14350) flgM 1406699..1406896 (+) 198 WP_002872343.1 flagellar biosynthesis anti-sigma factor FlgM -
  R8588_RS07270 (B11527_14360) - 1406939..1407373 (+) 435 WP_002779263.1 flagellar protein FlgN -
  R8588_RS07275 (B11527_14370) flgK 1407383..1409209 (+) 1827 WP_002867248.1 flagellar hook-associated protein FlgK -
  R8588_RS07280 (B11527_14380) - 1409226..1409990 (+) 765 WP_002851318.1 TIGR02757 family protein -
  R8588_RS07285 (B11527_14390) - 1409994..1410758 (+) 765 WP_002855821.1 TSUP family transporter -
  R8588_RS07290 (B11527_14400) ctsF 1410751..1411932 (-) 1182 WP_002868229.1 type II secretion system F family protein Machinery gene
  R8588_RS07295 (B11527_14410) ctsE 1411929..1413488 (-) 1560 WP_020247122.1 GspE/PulE family protein Machinery gene
  R8588_RS07300 (B11527_14420) ctsX 1413478..1414065 (-) 588 WP_002851370.1 membrane protein Machinery gene
  R8588_RS07305 (B11527_14430) ctsP 1414069..1414677 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  R8588_RS07310 (B11527_14440) ctsD 1414670..1416082 (-) 1413 WP_002855316.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R8588_RS07315 (B11527_14450) ctsR 1416060..1416371 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45730.33 Da        Isoelectric Point: 9.0938

>NTDB_id=105478 R8588_RS07290 WP_002868229.1 1410751..1411932(-) (ctsF) [Campylobacter jejuni strain BCH-11527]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=105478 R8588_RS07290 WP_002868229.1 1410751..1411932(-) (ctsF) [Campylobacter jejuni strain BCH-11527]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAGGCGATTAGAGAA
TTATATCTTATGCACTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGCGTTGCGATGAAAAGTGGAAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.98

99.746

0.987

Multiple sequence alignment