Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   D082_RS14955 Genome accession   NZ_CP007542
Coordinates   3289065..3289796 (-) Length   243 a.a.
NCBI ID   WP_028948317.1    Uniprot ID   -
Organism   Synechocystis sp. PCC 6714     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3284065..3294796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D082_RS14930 (D082_33000) - 3284709..3285395 (+) 687 WP_028948322.1 Uma2 family endonuclease -
  D082_RS14935 (D082_33010) rsmH 3285495..3286397 (-) 903 WP_051738951.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  D082_RS14940 (D082_33020) - 3286545..3287021 (+) 477 WP_028948320.1 DUF4168 domain-containing protein -
  D082_RS14945 (D082_33030) ureE 3287073..3287501 (+) 429 WP_028948319.1 urease accessory protein UreE -
  D082_RS14950 (D082_33040) - 3288084..3289037 (+) 954 WP_028948318.1 PRC-barrel domain-containing protein -
  D082_RS14955 (D082_33050) ysxA/radC 3289065..3289796 (-) 732 WP_028948317.1 DNA repair protein RadC Machinery gene
  D082_RS14960 (D082_33060) - 3289786..3290598 (-) 813 WP_038531100.1 rhodanese-related sulfurtransferase -
  D082_RS17875 (D082_33070) urtD 3290753..3291874 (-) 1122 WP_028948316.1 urea ABC transporter ATP-binding protein UrtD -
  D082_RS14970 (D082_33090) - 3292067..3292771 (-) 705 WP_238546751.1 DUF4340 domain-containing protein -
  D082_RS14975 (D082_33100) - 3292782..3293135 (-) 354 WP_238546752.1 hypothetical protein -
  D082_RS14980 (D082_33110) - 3293230..3294114 (-) 885 WP_028948314.1 ABC transporter permease -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26857.19 Da        Isoelectric Point: 7.2786

>NTDB_id=105477 D082_RS14955 WP_028948317.1 3289065..3289796(-) (ysxA/radC) [Synechocystis sp. PCC 6714]
MTYSLRIADLPEDERPREKLLKYGAKHLGNAELIAILLATGQGKGKLSAVGLGQYILQQLGQNRQDPMDVLRNIHPQELI
AFPGIGPAKATTVLAAVELGKRVFQSRPLEKMVLDSPEAAAIALGQDLMWQIQEHFAIAMLDVKNRLLATKVITIGTATE
TLIHPREIFREVIKQGATRLIVAHNHPSGGLDPSPEDIQLTELLLQGAQYLQIPVLDHLILGHGHHQSLRQCTNLWERFP
QGV

Nucleotide


Download         Length: 732 bp        

>NTDB_id=105477 D082_RS14955 WP_028948317.1 3289065..3289796(-) (ysxA/radC) [Synechocystis sp. PCC 6714]
ATGACCTATAGCCTGAGAATTGCCGACCTACCGGAAGATGAACGACCTAGGGAAAAGTTACTGAAATACGGAGCTAAACA
TCTTGGCAATGCAGAGTTGATCGCCATTCTATTAGCTACGGGCCAGGGTAAAGGAAAGCTGTCGGCGGTGGGTTTGGGGC
AATATATTTTGCAACAGTTAGGACAGAATCGTCAGGACCCCATGGATGTGTTGCGTAATATCCATCCCCAGGAATTGATT
GCCTTTCCCGGCATTGGTCCCGCTAAGGCCACAACAGTTTTAGCAGCAGTGGAATTGGGCAAACGAGTCTTCCAAAGTCG
TCCCCTGGAAAAAATGGTGCTTGATAGTCCCGAAGCGGCGGCGATCGCCCTGGGGCAAGACTTAATGTGGCAGATCCAAG
AGCATTTTGCCATTGCCATGTTGGATGTGAAAAATCGTTTGTTGGCCACTAAGGTAATTACCATTGGTACGGCCACGGAA
ACCCTAATCCATCCCAGGGAAATTTTTCGGGAAGTGATCAAACAAGGGGCTACCCGGTTAATTGTGGCCCATAACCATCC
CTCCGGTGGACTAGACCCTAGTCCGGAAGATATCCAGCTGACCGAATTGCTGCTCCAGGGAGCTCAATACTTACAAATCC
CGGTATTGGACCATCTCATCCTAGGCCATGGCCACCACCAAAGCCTAAGGCAATGTACCAACCTGTGGGAGCGTTTCCCC
CAAGGAGTATGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(115-231)

UPF0758 N-terminal (UPF0758_N)

(7-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

39.207

93.416

0.366

Multiple sequence alignment