Detailed information    

insolico Bioinformatically predicted

Overview

Name   chiS   Type   Regulator
Locus tag   BCU19_RS04585 Genome accession   NZ_CP170025
Coordinates   940169..943558 (-) Length   1129 a.a.
NCBI ID   WP_010436052.1    Uniprot ID   A0A7Z1MHN7
Organism   Vibrio cyclitrophicus strain 10N.261.55.E6     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 935169..948558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCU19_RS04570 (BCU19_04570) - 935594..936619 (-) 1026 WP_009847563.1 ABC transporter permease -
  BCU19_RS04575 (BCU19_04575) - 936622..937608 (-) 987 WP_010436046.1 ABC transporter permease -
  BCU19_RS04580 (BCU19_04580) - 937778..939460 (-) 1683 WP_016768984.1 ABC transporter substrate-binding protein -
  BCU19_RS04585 (BCU19_04585) chiS 940169..943558 (-) 3390 WP_010436052.1 response regulator Regulator
  BCU19_RS04590 (BCU19_04590) rsmC 943775..944797 (-) 1023 WP_010436055.1 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC -
  BCU19_RS04595 (BCU19_04595) - 944908..945993 (-) 1086 WP_009847558.1 AI-2E family transporter -
  BCU19_RS04600 (BCU19_04600) hemL 946336..947631 (-) 1296 WP_010436060.1 glutamate-1-semialdehyde 2,1-aminomutase -
  BCU19_RS04605 (BCU19_04605) erpA 947928..948269 (+) 342 WP_004734539.1 iron-sulfur cluster insertion protein ErpA -

Sequence

Protein


Download         Length: 1129 a.a.        Molecular weight: 127316.98 Da        Isoelectric Point: 5.3694

>NTDB_id=1054747 BCU19_RS04585 WP_010436052.1 940169..943558(-) (chiS) [Vibrio cyclitrophicus strain 10N.261.55.E6]
MFRFYRKQKFKRLQNTLMLAFLVLSITPVTLIAIFFLQSHSQDLQEQSTSHLVSVRDTKQQQIVDYLQAQESQVMGFVRS
ELANASGGRFYGLINAFQRLGLDIDEARSNAQQRYIQGSGDQIKTSILPESSSFIGSERYRLLHKRYHNAYLELLKRSDF
DDILLVDINGNVAYSVFKNDDYGTNLLTGKYKDSNLGVTFQRLAKDVKDKRKSNEDYTPVIVSDFKDEDGKQTAWLGAPI
VQQGYLHSYAMFRLPINGITKLIADLNKRSNIQTLLVGDDHLPRSLAHSQESINLSLDVVDKALAGETAVGTFDNTQDQA
IIAAYTPIDLKYATWALVVELPEKEAFARIHQLEKIFVIVMLTAIILVFVASHYLSNFITSPLLKLTWAAEKVSAGDLDE
TMINTERKDEIGRLAISFERMQRSIREKMQLIKSQNDELEDNLKTIQKQNEELQLANKLKDEFLATTSHELRTPLHGMVG
IAEALISGANGPIPANQKYQLDIIINSGQRLATLVDDLLDYHKMRYGSLDIKKSAVDLSAATSLVLELSHHLLGNKPIRI
INQVPSDLGLVSSDPQRLEQVMYNLVGNAIKYTSEGKIVISASVIDDNIRVQVVDTGQGIPAEYLEHIFEPLIQAGQDSS
NYRQGAGLGLSISRQLIELMGGSLYVSSQPMLGTTFSFTLPLATQQELDSYNESGSYSHFQAPDLIDNSQQENSVINEDP
NGPLLVIADDEPVNLRVLDSFLKLEGYRVRTACDGPETIELIEKEKPELLLLDIMMPGMSGYQVCEALRKRYDHAQLPII
MLTALNQAEDRVRGFEAGANDYLSKPFNKQELAARITAHLSASKAEQRRLENDQLQLELKHRAMVEANLLETQGRLLEQL
ESAPEAIICIRDDQRIRFANEAAAKLFRRGQEQLKRSMADEIIAPKYLKVEQAHYCGDIDIYIDDTRQRIPSDILKLPEG
SGLDTMYIFNVGGGVNSNRVNNLETAVEALSSYAFEGDKDKLQQLKELGGEFTRLADKASGEGKNKQELMREVLVDVMTN
AIIYWESVTGETKFAFAEKSGLWRVYLDRSTLQTRTLDKYLRVETLPKTPRWRTVLSSIEFILEHCKEQTPERTHIEMLR
DKLQKLLTS

Nucleotide


Download         Length: 3390 bp        

>NTDB_id=1054747 BCU19_RS04585 WP_010436052.1 940169..943558(-) (chiS) [Vibrio cyclitrophicus strain 10N.261.55.E6]
ATGTTTAGATTCTATCGTAAGCAGAAGTTTAAGCGCCTTCAAAATACCCTAATGTTGGCATTTCTTGTCCTCAGTATTAC
ACCAGTGACACTTATCGCGATATTTTTCCTCCAATCGCACAGTCAGGATCTTCAGGAACAAAGCACCTCACACCTTGTTT
CGGTTCGTGATACTAAGCAGCAGCAAATTGTCGATTACCTGCAAGCTCAAGAATCCCAAGTCATGGGCTTTGTTCGCTCA
GAATTGGCCAATGCCAGTGGCGGACGCTTTTATGGTTTGATTAACGCCTTCCAGCGTCTCGGTTTAGATATTGACGAGGC
ACGTAGCAATGCTCAGCAACGCTACATCCAAGGCTCCGGCGATCAAATTAAAACATCGATTCTTCCAGAATCCAGCAGCT
TTATAGGCAGTGAACGTTATCGTCTGCTGCACAAGCGCTACCATAACGCTTACCTAGAGCTGCTTAAACGCTCCGATTTT
GACGATATCTTATTGGTTGATATTAACGGCAATGTGGCTTATTCGGTCTTTAAAAATGACGATTACGGCACCAATTTGCT
GACTGGAAAATACAAAGATTCAAATCTCGGTGTTACCTTTCAACGCTTAGCAAAAGACGTCAAAGACAAACGAAAATCCA
ACGAAGATTACACGCCCGTTATTGTTTCCGACTTTAAAGACGAAGACGGAAAACAAACCGCATGGTTAGGTGCGCCTATC
GTACAACAGGGCTATCTACACAGTTATGCGATGTTTAGACTACCGATTAACGGCATTACTAAGCTGATCGCCGATTTAAA
TAAGCGCTCAAATATTCAAACCCTTTTGGTTGGTGACGATCACTTGCCTCGCAGCCTTGCGCACTCTCAAGAGTCGATTA
ATTTGAGTTTGGATGTTGTCGATAAGGCACTTGCCGGTGAAACAGCCGTTGGGACGTTTGATAACACTCAAGATCAAGCG
ATCATCGCAGCCTACACTCCTATTGATCTTAAATACGCAACATGGGCTTTGGTCGTGGAACTTCCAGAAAAAGAAGCCTT
TGCTCGTATTCATCAGCTAGAAAAGATCTTCGTGATCGTTATGCTAACAGCGATCATTCTTGTATTTGTCGCATCGCATT
ATCTGTCTAACTTTATCACTTCCCCACTACTTAAACTGACGTGGGCTGCCGAGAAAGTCTCGGCGGGAGATCTTGATGAA
ACCATGATCAATACAGAACGCAAAGATGAAATAGGTCGCTTGGCGATTAGTTTCGAAAGAATGCAGCGATCGATTCGTGA
AAAGATGCAGCTGATCAAGAGCCAAAATGATGAACTAGAAGACAACCTTAAGACCATTCAAAAGCAAAACGAAGAGTTGC
AACTGGCCAATAAACTGAAAGATGAGTTCTTAGCCACCACCTCACATGAATTGAGAACGCCATTGCATGGCATGGTTGGT
ATTGCTGAAGCGCTGATATCTGGTGCGAATGGTCCTATCCCTGCCAACCAGAAATACCAACTGGATATCATCATCAATAG
TGGTCAGAGATTGGCAACATTGGTTGATGATCTGCTCGATTATCACAAAATGCGTTATGGCAGCTTGGACATTAAAAAGT
CAGCGGTTGATTTGTCTGCTGCCACCAGCCTAGTGCTTGAGTTATCTCATCATCTATTAGGTAACAAGCCAATCCGCATT
ATCAACCAAGTTCCAAGTGATTTAGGGCTCGTTTCATCCGATCCTCAACGACTTGAGCAAGTCATGTATAACTTGGTTGG
CAATGCTATCAAGTACACATCCGAAGGCAAGATTGTTATCTCAGCAAGCGTTATCGACGACAACATTCGTGTACAAGTTG
TCGATACAGGTCAAGGTATCCCAGCAGAATACCTTGAACACATCTTTGAACCACTGATTCAAGCAGGCCAAGATTCAAGT
AACTATCGCCAAGGTGCAGGGCTTGGGTTATCCATTAGCCGTCAGCTCATTGAACTAATGGGCGGCTCGTTGTACGTGAG
TAGTCAACCAATGCTTGGGACAACCTTCAGCTTCACATTACCTCTAGCTACCCAACAAGAATTGGATAGTTACAATGAAT
CAGGGAGCTACTCACACTTCCAAGCCCCAGATTTAATTGATAACTCTCAGCAAGAAAACAGTGTTATCAACGAAGACCCT
AATGGTCCGTTGTTAGTGATTGCTGACGATGAGCCAGTCAACCTGCGCGTGCTAGACAGCTTCTTAAAATTGGAAGGTTA
CCGAGTTCGTACCGCATGTGACGGCCCTGAAACCATTGAACTGATTGAGAAAGAGAAACCAGAGCTACTTCTGCTCGATA
TCATGATGCCAGGTATGAGCGGCTATCAGGTTTGTGAAGCACTTCGTAAGCGATACGATCATGCACAGTTACCAATCATC
ATGCTAACGGCACTCAACCAAGCAGAAGACCGTGTTCGAGGTTTCGAAGCAGGTGCCAATGACTATTTATCTAAACCGTT
CAACAAACAAGAACTGGCCGCTCGAATTACAGCGCATCTATCAGCAAGTAAAGCCGAACAGAGACGCCTTGAAAACGACC
AACTGCAACTGGAACTCAAGCATAGAGCTATGGTTGAAGCTAACCTGTTGGAAACTCAAGGTCGACTGCTAGAACAACTA
GAATCAGCCCCTGAAGCCATTATATGTATTCGTGATGACCAACGTATTCGCTTCGCCAACGAAGCGGCAGCGAAACTATT
TAGACGTGGGCAAGAACAACTCAAGCGTTCAATGGCCGACGAGATAATCGCGCCTAAATATCTTAAAGTGGAACAAGCCC
ATTACTGTGGTGATATTGATATCTACATAGATGACACACGTCAGCGCATACCAAGTGATATCCTTAAGCTACCTGAAGGC
TCAGGGCTCGACACAATGTATATCTTTAATGTGGGTGGTGGTGTTAACTCAAACCGAGTTAATAATCTTGAAACCGCGGT
TGAAGCACTTTCAAGCTACGCCTTTGAAGGTGACAAAGATAAACTACAACAGCTCAAGGAACTTGGCGGTGAGTTTACTC
GCCTTGCTGATAAAGCGAGCGGTGAAGGTAAAAACAAACAAGAACTGATGCGTGAAGTACTAGTCGATGTCATGACTAAT
GCCATCATCTACTGGGAGTCTGTTACTGGTGAAACCAAGTTTGCCTTCGCAGAGAAAAGTGGGTTGTGGCGCGTCTATTT
AGACCGCAGCACCCTGCAAACTCGAACGCTAGACAAATACCTACGCGTCGAAACCCTACCGAAAACGCCTCGCTGGCGAA
CGGTACTAAGCTCAATCGAATTCATACTTGAGCACTGTAAAGAACAAACACCAGAAAGAACTCATATTGAGATGCTAAGG
GATAAACTACAGAAACTACTGACTAGTTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(574-683)

Response regulator receiver domain (Response_reg)

(726-836)

HAMP domain (HAMP)

(375-427)

His Kinase A (phospho-acceptor) domain (HisKA)

(460-525)

PAS domain (PAS_8)

(880-914)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z1MHN7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chiS Vibrio cholerae strain A1552

76.262

100

0.763

Multiple sequence alignment