Detailed information NTG1054738

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BCU19_RS04190
• Genome accession: NZ_CP170025
• Coordinates: 850548..851528 (+)
• Length: 326 a.a.
• NCBI ID: WP_010435803.1
• Uniprot ID: A0AAN0N9Q1
• Organism: Vibrio cyclitrophicus strain 10N.261.55.E6
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 845548..856528

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BCU19_RS04160 (BCU19_04160)	ispD	845783..846484 (+)	702	WP_010435790.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
BCU19_RS04165 (BCU19_04165)	ispF	846487..846966 (+)	480	WP_010435793.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BCU19_RS04170 (BCU19_04170)	truD	846989..848035 (+)	1047	WP_010435794.1	tRNA pseudouridine(13) synthase TruD	-
BCU19_RS04175 (BCU19_04175)	surE	848111..848854 (+)	744	WP_010435796.1	5'/3'-nucleotidase SurE	-
BCU19_RS04180 (BCU19_04180)	-	848855..849481 (+)	627	WP_010435798.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
BCU19_RS04185 (BCU19_04185)	nlpD	849517..850449 (+)	933	WP_016768192.1	murein hydrolase activator NlpD	-
BCU19_RS04190 (BCU19_04190)	rpoS	850548..851528 (+)	981	WP_010435803.1	RNA polymerase sigma factor RpoS	Regulator
BCU19_RS04195 (BCU19_04195)	mutS	851638..854199 (-)	2562	WP_016768193.1	DNA mismatch repair protein MutS	-
BCU19_RS04200 (BCU19_04200)	pncC	854323..854817 (+)	495	WP_016768194.1	nicotinamide-nucleotide amidase	-
BCU19_RS04205 (BCU19_04205)	recA	854957..855997 (+)	1041	WP_010435812.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 37267.52 Da
• Isoelectric Point: 5.2707

>NTDB_id=1054738 BCU19_RS04190 WP_010435803.1 850548..851528(+) (rpoS) [Vibrio cyclitrophicus strain 10N.261.55.E6]
MSISNAVTKEEFDLNQVTTESETLGKAKRTVTKKTEAKEEAEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIATKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDSDIKNSLIFWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREICLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide

• Length: 981 bp

>NTDB_id=1054738 BCU19_RS04190 WP_010435803.1 850548..851528(+) (rpoS) [Vibrio cyclitrophicus strain 10N.261.55.E6]
ATGAGTATAAGCAATGCAGTAACCAAAGAAGAGTTCGATCTTAACCAAGTAACCACGGAATCGGAAACACTTGGAAAAGC
AAAACGAACAGTCACTAAGAAAACCGAAGCGAAAGAAGAAGCTGAAGTTACGTCTAAAAGTTTAGATGCTACTCAACTCT
ACTTAGGCGAAATTGGTTTCTCACCACTACTAACCGCTGAAGAAGAAGTGCTTTATGCACGTCGAGCTCTACGCGGTGAT
GAAGCGGCCCGCAAACGCATGATTGAAAGTAACCTGCGTTTGGTGGTTAAAATATCTCGTCGTTATAGCAACCGTGGTTT
GGCACTTCTCGATCTAATTGAAGAAGGCAACCTAGGCTTGATTCGCGCCGTAGAGAAGTTTGACCCAGAGCGAGGTTTCC
GCTTTTCAACTTACGCGACATGGTGGATTCGTCAAACCATTGAACGTGCTTTAATGAATCAGACTCGCACCATCCGTTTG
CCAATCCATGTTGTGAAAGAGCTGAACATCTACCTACGTACAGCAAGAGAGTTATCACAAAAGCTTGACCATGAACCAAC
GGCTGAAGAAATTGCTACTAAGCTAGACAAGCCAGTTGGTGATGTGAGCAAGATGCTTCGTTTAAACGAGCGAGTGAGCT
CCGTTGATACGCCAATTGGTGGTGACGGTGAGAAAGCACTGTTGGATATTATTCCGGACATCAACAATTCCGATCCTGAG
GTTTCAACTCAAGATAGCGATATCAAGAACTCGTTGATTTTCTGGCTAGATGAGCTGAACCCGAAACAGAAAGAGGTGCT
TGCACGTCGCTTTGGACTACTTGGCTATGAACCGTCAACGTTAGAAGAAGTAGGCCGTGAAATCTGCCTGACTCGTGAAC
GTGTTCGTCAAATCCAAGTTGAAGGTCTTCGCCGTCTACGAGAGATTCTGATCAAGCAAGGTCTGAATATGGAAAACCTG
TTTAACGTTGAAAACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (49-82)

• Sigma-70 region 2 (Sigma70_r2) (87-156)

• Sigma-70, region 4 (Sigma70_r4) (255-308)

• Sigma-70 region 3 (Sigma70_r3) (167-240)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.437	100	0.834