Detailed information NTG1054706

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BCU28_RS14335
• Genome accession: NZ_CP170022
• Coordinates: 3211889..3212869 (-)
• Length: 326 a.a.
• NCBI ID: WP_010435803.1
• Uniprot ID: A0AAN0N9Q1
• Organism: Vibrio cyclitrophicus strain 10N.286.45.B7
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3206889..3217869

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BCU28_RS14320 (BCU28_14320)	recA	3207420..3208460 (-)	1041	WP_010435812.1	recombinase RecA	Machinery gene
BCU28_RS14325 (BCU28_14325)	pncC	3208600..3209094 (-)	495	WP_016768194.1	nicotinamide-nucleotide amidase	-
BCU28_RS14330 (BCU28_14330)	mutS	3209218..3211779 (+)	2562	WP_016768193.1	DNA mismatch repair protein MutS	-
BCU28_RS14335 (BCU28_14335)	rpoS	3211889..3212869 (-)	981	WP_010435803.1	RNA polymerase sigma factor RpoS	Regulator
BCU28_RS14340 (BCU28_14340)	nlpD	3212968..3213882 (-)	915	WP_016790276.1	murein hydrolase activator NlpD	-
BCU28_RS14345 (BCU28_14345)	-	3213918..3214544 (-)	627	WP_010435798.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
BCU28_RS14350 (BCU28_14350)	surE	3214545..3215288 (-)	744	WP_010435796.1	5'/3'-nucleotidase SurE	-
BCU28_RS14355 (BCU28_14355)	truD	3215364..3216410 (-)	1047	WP_010435794.1	tRNA pseudouridine(13) synthase TruD	-
BCU28_RS14360 (BCU28_14360)	ispF	3216433..3216912 (-)	480	WP_010435793.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BCU28_RS14365 (BCU28_14365)	ispD	3216915..3217616 (-)	702	WP_016790277.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 37267.52 Da
• Isoelectric Point: 5.2707

>NTDB_id=1054706 BCU28_RS14335 WP_010435803.1 3211889..3212869(-) (rpoS) [Vibrio cyclitrophicus strain 10N.286.45.B7]
MSISNAVTKEEFDLNQVTTESETLGKAKRTVTKKTEAKEEAEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIATKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDSDIKNSLIFWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREICLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide

• Length: 981 bp

>NTDB_id=1054706 BCU28_RS14335 WP_010435803.1 3211889..3212869(-) (rpoS) [Vibrio cyclitrophicus strain 10N.286.45.B7]
ATGAGTATAAGCAATGCAGTAACCAAAGAAGAGTTCGATCTTAACCAAGTAACCACGGAATCGGAAACACTTGGAAAAGC
AAAACGAACAGTCACTAAGAAAACCGAAGCGAAAGAAGAAGCTGAAGTTACGTCTAAAAGTTTAGATGCTACTCAACTCT
ACTTAGGCGAAATTGGTTTCTCACCACTACTAACCGCTGAAGAAGAAGTGCTTTATGCACGTCGAGCTCTACGCGGTGAT
GAAGCGGCCCGCAAACGCATGATTGAAAGTAACCTGCGTTTGGTGGTTAAAATATCTCGTCGTTATAGCAACCGTGGTTT
GGCACTTCTCGATCTAATTGAAGAAGGCAACCTAGGCTTGATTCGCGCCGTAGAGAAGTTTGACCCAGAGCGAGGTTTCC
GCTTTTCAACTTACGCGACATGGTGGATTCGTCAAACCATTGAACGTGCTTTAATGAATCAGACTCGCACCATCCGTTTG
CCAATCCATGTTGTGAAAGAGCTGAACATCTACCTACGTACAGCAAGAGAGTTATCACAAAAGCTTGACCATGAACCAAC
GGCTGAAGAAATTGCTACTAAGCTAGACAAGCCAGTTGGTGATGTGAGCAAGATGCTTCGTTTAAACGAGCGAGTGAGCT
CCGTTGATACGCCAATTGGTGGTGACGGTGAGAAAGCACTGTTGGATATTATTCCGGACATCAACAATTCCGATCCTGAG
GTTTCAACTCAAGATAGCGATATCAAGAACTCGTTGATTTTCTGGCTAGATGAGCTGAACCCGAAACAGAAAGAGGTGCT
TGCACGTCGCTTTGGACTACTTGGCTATGAACCGTCAACGTTAGAAGAAGTAGGCCGTGAAATCTGCCTGACTCGTGAAC
GTGTTCGTCAAATCCAAGTTGAAGGTCTTCGCCGTCTACGAGAGATTCTGATCAAGCAAGGTCTGAACATGGAAAACCTG
TTTAACGTTGAAAACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (49-82)

• Sigma-70 region 2 (Sigma70_r2) (87-156)

• Sigma-70, region 4 (Sigma70_r4) (255-308)

• Sigma-70 region 3 (Sigma70_r3) (167-240)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.437	100	0.834