Detailed information NTG1054697

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: BCU28_RS13935
• Genome accession: NZ_CP170022
• Coordinates: 3117786..3121175 (+)
• Length: 1129 a.a.
• NCBI ID: WP_412496538.1
• Uniprot ID: -
• Organism: Vibrio cyclitrophicus strain 10N.286.45.B7
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 3112786..3126175

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BCU28_RS13915 (BCU28_13915)	erpA	3113075..3113416 (-)	342	WP_004734539.1	iron-sulfur cluster insertion protein ErpA	-
BCU28_RS13920 (BCU28_13920)	hemL	3113713..3115008 (+)	1296	WP_010436060.1	glutamate-1-semialdehyde 2,1-aminomutase	-
BCU28_RS13925 (BCU28_13925)	-	3115351..3116436 (+)	1086	WP_016790776.1	AI-2E family transporter	-
BCU28_RS13930 (BCU28_13930)	rsmC	3116547..3117569 (+)	1023	WP_010436055.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
BCU28_RS13935 (BCU28_13935)	chiS	3117786..3121175 (+)	3390	WP_412496538.1	response regulator	Regulator
BCU28_RS13940 (BCU28_13940)	-	3121884..3123566 (+)	1683	WP_016768984.1	ABC transporter substrate-binding protein	-
BCU28_RS13945 (BCU28_13945)	-	3123736..3124722 (+)	987	WP_010436046.1	ABC transporter permease	-
BCU28_RS13950 (BCU28_13950)	-	3124725..3125750 (+)	1026	WP_009847563.1	ABC transporter permease	-

Sequence

Protein

• Length: 1129 a.a.
• Molecular weight: 127309.98 Da
• Isoelectric Point: 5.4254

>NTDB_id=1054697 BCU28_RS13935 WP_412496538.1 3117786..3121175(+) (chiS) [Vibrio cyclitrophicus strain 10N.286.45.B7]
MFRFYRKQKFKRLQNTLMLAFLVLSITPVTLIAIFFLQSHSQDLQEQSTSHLVSVRDTKQQQIVDYLQAQESQVMGFVRS
ELANASGGRFYGLINAFQRLGLDIDEARSNAQQRYIQGSGDQIKTSILPESSSFIGSERYRLLHKRYHNAYLELLKRSDF
DDILLVDINGNVAYSVFKYDDYGTNLLTGKYKDSNLGVTFQRLAKDVKDKRKSNEDYTPVIVSDFKDEDGKQTAWLGAPI
VQQGYLHSYAMFRLPINGITKLIADLNKRSNIQTLLVGDDHLPRSLAHSQESINLSLDVVDKALAGETAVGTFDNTQDQA
IIAAYTPIDLKYATWALVVELPEKEAFARIHQLEKIFVIVMLTAIILVFVASHYLSNFITSPLLKLTWAAEKVSAGDLDE
TMINTERKDEIGRLAVSFERMQRSIRDKMQLIKSQNDELEDNLKTIQKQNEELQLANKLKDEFLATTSHELRTPLHGMVG
IAEALISGANGPIPASQKYQLDIIINSGQRLATLVDDLLDYHKMRYGSLDIKKSAVDLSAATSLVLELSHHLLGNKPIRI
INQVPSDLGLVSSDPQRLEQVMYNLVGNAIKYTSEGKIVISASVIDDNIRVQVVDTGQGIPAEYLEHIFEPLIQAGQDSS
NYRQGAGLGLSISRQLIELMGGSLYVSSQPMLGTTFSFTLPLATQQELDSYNESGSYSHFQAPDLIDNSQQENSVINEDP
NGPLLVIADDEPVNLRVLDSFLKLEGYRVRTACDGPETIELIEKEKPELLLLDIMMPGMSGYQVCEALRKRYNHAQLPII
MLTALNQAEDRVRGFEAGANDYLSKPFNKQELAARITAHLSASKAEQRRLENDQLQLELKHRAMVEANLLETQGRLLEQL
ESAPEAIICIRDDQRIRFANEAAAKLFRRGQEQLKRSMADEIIAPKYLKVEQAHYCGDIDIYIDDTRQRIPSDILKLPEG
SGLDTMYIFNVGGGVNSNRVNNLETAVEALSSYAFEGDKDKLQQLKELGGEFTRLADKASGEGKNKQELMREVLVDVMTN
AIIYWESVTGETKFAFAEKSGLWRVYLDRSTLQTRTLDKYLRVETLPKTPRWRTVLSSIEFILEHCKEQTPERTHIEMLR
DKLQKLLTS

Nucleotide

• Length: 3390 bp

>NTDB_id=1054697 BCU28_RS13935 WP_412496538.1 3117786..3121175(+) (chiS) [Vibrio cyclitrophicus strain 10N.286.45.B7]
ATGTTTAGATTCTATCGTAAGCAGAAGTTTAAGCGCCTTCAAAATACCCTAATGTTGGCATTTCTTGTCCTCAGTATTAC
ACCAGTGACACTTATCGCGATATTTTTCCTCCAATCGCACAGTCAGGATCTTCAGGAACAAAGCACCTCACACCTTGTTT
CGGTTCGTGATACTAAGCAGCAGCAAATTGTCGATTACCTGCAAGCTCAAGAATCCCAAGTCATGGGCTTTGTTCGCTCA
GAATTGGCCAATGCCAGTGGCGGACGCTTTTATGGTTTGATTAACGCCTTCCAGCGTCTCGGTTTAGATATTGACGAGGC
ACGTAGCAATGCTCAGCAACGCTACATCCAAGGCTCCGGCGATCAAATTAAAACATCGATTCTTCCAGAATCCAGCAGCT
TTATAGGCAGTGAACGTTATCGTCTGCTGCACAAGCGCTACCATAACGCTTACCTAGAGCTGCTTAAACGCTCCGATTTT
GACGATATCTTATTGGTTGATATTAACGGCAATGTGGCTTATTCGGTGTTTAAATATGACGATTACGGCACCAATTTGCT
GACTGGAAAATACAAAGATTCAAATCTCGGTGTTACCTTTCAACGCTTAGCAAAAGATGTAAAAGACAAACGTAAATCCA
ACGAAGATTACACGCCCGTTATTGTTTCCGACTTTAAAGACGAAGACGGAAAACAAACCGCATGGTTAGGTGCGCCTATC
GTACAACAGGGCTATCTACACAGTTATGCGATGTTTAGACTACCGATTAACGGCATTACTAAGCTGATCGCCGATTTAAA
TAAGCGCTCAAATATTCAAACCCTTTTGGTTGGTGACGATCACTTGCCTCGCAGCCTTGCGCACTCACAAGAGTCGATTA
ATTTGAGTTTGGATGTTGTCGATAAGGCACTTGCCGGTGAAACAGCCGTTGGGACGTTTGATAACACTCAAGATCAAGCG
ATCATCGCAGCCTACACTCCTATTGATCTTAAATACGCAACATGGGCTTTGGTCGTGGAACTTCCAGAAAAAGAAGCCTT
TGCTCGTATTCATCAGCTAGAAAAGATCTTCGTGATCGTTATGCTAACAGCGATCATTCTTGTATTTGTCGCATCGCATT
ATCTGTCTAACTTTATCACTTCCCCACTACTTAAACTGACGTGGGCTGCCGAGAAAGTCTCGGCGGGAGATCTTGATGAA
ACCATGATCAATACCGAACGCAAAGATGAAATAGGTCGCTTGGCGGTGAGTTTCGAAAGAATGCAGCGATCGATTCGTGA
CAAAATGCAGCTGATCAAGAGCCAAAACGATGAACTAGAGGACAACCTTAAGACCATTCAAAAGCAAAACGAAGAGTTGC
AACTGGCCAATAAACTGAAAGATGAGTTCTTAGCCACCACCTCACATGAATTGAGAACGCCATTGCATGGCATGGTTGGT
ATTGCTGAAGCGCTGATATCTGGTGCCAACGGCCCTATTCCTGCCAGCCAGAAATACCAACTGGATATCATCATCAATAG
TGGTCAGAGATTGGCAACATTGGTTGATGATCTTCTCGATTATCACAAAATGCGTTATGGCAGCTTGGACATTAAAAAGT
CAGCGGTTGACCTGTCGGCTGCCACCAGCTTGGTACTTGAGTTATCTCATCACCTGTTAGGTAACAAACCAATCCGTATC
ATTAACCAAGTGCCGAGTGATTTAGGGCTCGTTTCATCCGATCCTCAACGACTTGAGCAAGTCATGTATAACTTGGTTGG
CAATGCTATCAAGTACACATCCGAAGGCAAGATTGTTATCTCAGCAAGCGTTATCGACGACAACATTCGTGTACAAGTTG
TCGATACAGGTCAAGGTATCCCAGCAGAATACCTTGAACACATCTTTGAACCACTGATTCAAGCAGGCCAAGATTCAAGT
AACTATCGCCAAGGTGCAGGGCTTGGGTTATCCATTAGCCGTCAGCTCATTGAACTAATGGGCGGCTCGTTGTACGTGAG
TAGTCAACCAATGCTTGGGACAACCTTCAGCTTCACATTACCTCTAGCTACCCAACAAGAATTGGATAGTTACAATGAAT
CAGGGAGCTACTCACACTTCCAAGCCCCAGATTTAATTGATAACTCTCAGCAAGAAAACAGTGTTATCAACGAAGACCCT
AATGGTCCGTTGTTAGTGATTGCTGACGATGAGCCAGTCAACCTGCGCGTGCTAGACAGCTTCTTAAAATTGGAAGGTTA
CCGAGTTCGTACCGCATGTGACGGCCCTGAAACCATTGAACTGATTGAGAAAGAGAAACCAGAGCTACTTCTGCTCGATA
TCATGATGCCAGGTATGAGCGGCTATCAGGTTTGTGAAGCACTTCGTAAGCGATACAATCATGCACAGTTACCAATCATC
ATGCTAACGGCACTCAACCAAGCAGAAGACCGTGTTCGAGGTTTCGAAGCAGGTGCCAATGACTATTTATCTAAACCGTT
CAACAAACAAGAACTGGCCGCTCGAATTACAGCGCATCTATCAGCAAGTAAAGCCGAACAGAGACGCCTTGAAAACGACC
AACTGCAACTGGAACTCAAGCATAGAGCTATGGTTGAAGCTAACCTGTTGGAAACTCAAGGTCGACTGCTAGAACAACTA
GAATCAGCCCCTGAAGCCATTATATGTATTCGTGATGACCAACGTATTCGCTTCGCCAACGAAGCGGCAGCGAAACTATT
TAGACGTGGGCAAGAACAACTCAAGCGTTCAATGGCCGACGAGATAATCGCGCCTAAATATCTTAAAGTGGAACAAGCCC
ATTACTGTGGTGATATTGATATCTACATAGATGACACACGTCAGCGCATACCAAGTGATATCCTTAAGCTACCTGAAGGC
TCAGGGCTCGACACAATGTATATCTTTAATGTGGGTGGTGGTGTTAACTCAAACCGAGTTAATAATCTTGAAACCGCGGT
TGAAGCACTTTCAAGCTACGCCTTTGAAGGTGACAAAGATAAACTACAACAGCTCAAGGAACTTGGCGGTGAGTTTACTC
GCCTTGCTGATAAAGCGAGCGGTGAAGGTAAAAACAAACAAGAACTGATGCGTGAAGTACTAGTCGATGTCATGACTAAT
GCCATCATCTACTGGGAGTCTGTTACTGGTGAAACCAAGTTTGCCTTCGCAGAGAAAAGTGGGTTGTGGCGCGTCTATTT
AGACCGCAGCACCCTGCAAACTCGAACGCTAGACAAATACCTACGCGTCGAAACCCTACCGAAAACGCCTCGCTGGCGAA
CGGTACTAAGCTCAATCGAATTCATACTTGAGCACTGTAAAGAACAAACACCAGAAAGAACTCATATTGAGATGCTAAGG
GATAAACTACAGAAACTACTGACTAGTTAA

Domains

Predicted by InterproScan.

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-683)

• HAMP domain (HAMP) (375-427)

• Response regulator receiver domain (Response_reg) (726-836)

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

• PAS domain (PAS_8) (880-914)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	76.262	100	0.763