Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   BCU28_RS08035 Genome accession   NZ_CP170022
Coordinates   1737533..1738957 (-) Length   474 a.a.
NCBI ID   WP_016790600.1    Uniprot ID   -
Organism   Vibrio cyclitrophicus strain 10N.286.45.B7     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1732533..1743957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCU28_RS08010 (BCU28_08010) - 1733072..1733725 (+) 654 WP_010441236.1 thiopurine S-methyltransferase -
  BCU28_RS08015 (BCU28_08015) purT 1733856..1735031 (-) 1176 WP_016790599.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  BCU28_RS08020 (BCU28_08020) cdd 1735198..1736085 (-) 888 WP_010441232.1 cytidine deaminase -
  BCU28_RS08025 (BCU28_08025) - 1736456..1737133 (-) 678 WP_010441230.1 LrgB family protein -
  BCU28_RS08030 (BCU28_08030) - 1737136..1737507 (-) 372 WP_010441228.1 CidA/LrgA family protein -
  BCU28_RS08035 (BCU28_08035) sbcB 1737533..1738957 (-) 1425 WP_016790600.1 exodeoxyribonuclease I Machinery gene
  BCU28_RS08040 (BCU28_08040) - 1739928..1740362 (+) 435 WP_010441224.1 DUF4402 domain-containing protein -
  BCU28_RS08045 (BCU28_08045) - 1740416..1740853 (+) 438 WP_016786202.1 DUF4402 domain-containing protein -
  BCU28_RS08050 (BCU28_08050) - 1740850..1741560 (+) 711 WP_016790601.1 molecular chaperone -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54617.91 Da        Isoelectric Point: 4.9171

>NTDB_id=1054691 BCU28_RS08035 WP_016790600.1 1737533..1738957(-) (sbcB) [Vibrio cyclitrophicus strain 10N.286.45.B7]
MSSDNQPTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNVIGEPLVIYCQPPADYLPAPEAALITRITPQKAMSQGLPEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRAVHALRPEGIVWPENEEGYP
SFKLEHLSVANGIEHENAHDAMADVIATIELAKKLKAAQPKMFDYLYSMRHKRKLNELVDIVNMTPLIHVSGMFGRDCNY
TSWIVPMAWHPTNQNAVIVVDLAKDPSPLLELDSDALRERLYTKRSELGEDELPVPIKLVQLNKCPILAPAKTLTAENAE
TIGIDRQQCLKNLALLREHTEIREKLIGLYSQEREYEKSDDVDTHLYDGFFSPGDKTAMDIIRQTDPNNLAALDITFGDE
RIKPLLFRYRARHFPWTLDEAEQLKWANHCREFYESRLEEYMLNLENLAHEHESDEKKMAILKAVYQYVEKLAS

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=1054691 BCU28_RS08035 WP_016790600.1 1737533..1738957(-) (sbcB) [Vibrio cyclitrophicus strain 10N.286.45.B7]
ATGAGTTCAGATAATCAGCCAACCTATTTCTTTTTCGATTACGAAACGTGGGGCGTCAGCCCAGCGAAAGATCGCCCGAG
TCAGTTCGCCGGTGTTCGTACCGACCAAGATTTCAACGTTATCGGAGAGCCATTGGTCATCTATTGCCAACCTCCTGCTG
ATTACTTACCAGCGCCGGAAGCTGCACTCATTACTCGCATTACACCTCAAAAAGCGATGTCTCAAGGCTTACCTGAACCT
GAATTTATCGCGAAGATCCACGCAGAGCTTGCTAAGCCGAACACAACTAGCCTTGGCTACAACAGCATTCGATTCGACGA
CGAAGTAACACGCTATACCTGTTACCGTAATTTCATCGATCCATATGCATGGAGCTGGCAGAACGGCAACTCTCGTTGGG
ATCTACTCGACGTGATGCGCGCGGTACATGCACTTCGCCCTGAAGGTATTGTTTGGCCAGAGAATGAAGAAGGTTACCCA
AGCTTCAAACTGGAACATTTGTCAGTGGCAAATGGCATTGAACACGAAAACGCGCACGATGCGATGGCCGATGTTATTGC
TACCATTGAATTAGCAAAGAAGTTGAAGGCTGCACAGCCTAAAATGTTTGATTACCTTTACAGCATGCGTCACAAACGCA
AATTGAATGAGTTAGTTGACATTGTAAACATGACGCCTTTAATCCACGTTTCAGGCATGTTTGGTCGTGATTGTAATTAC
ACGAGTTGGATTGTGCCGATGGCTTGGCACCCAACCAACCAAAATGCGGTTATCGTAGTCGACTTAGCCAAAGATCCTAG
CCCGCTGCTGGAGCTTGATTCTGACGCCCTCCGTGAAAGGCTCTACACTAAACGCAGTGAACTTGGTGAAGACGAGTTAC
CCGTACCCATCAAATTGGTTCAACTGAACAAGTGCCCTATTCTCGCACCCGCCAAAACTCTGACGGCTGAAAATGCGGAA
ACGATAGGTATCGATCGCCAACAGTGCTTAAAGAACTTAGCGCTATTACGCGAACACACAGAGATCCGCGAAAAACTGAT
CGGTTTGTATTCACAAGAACGCGAATACGAGAAAAGTGATGACGTAGACACTCATCTGTATGACGGCTTCTTCTCGCCAG
GCGACAAAACCGCAATGGACATCATTCGTCAAACTGACCCAAATAACTTGGCTGCTTTAGACATCACTTTTGGTGACGAA
CGTATTAAACCTTTGTTGTTCCGTTACCGTGCTCGTCATTTCCCGTGGACGTTAGACGAAGCGGAACAACTGAAATGGGC
TAACCACTGTCGAGAGTTTTACGAAAGTCGCTTAGAAGAGTACATGCTGAACCTAGAAAACCTCGCACACGAGCATGAAA
GTGACGAGAAGAAAATGGCTATCTTGAAAGCGGTTTATCAATACGTAGAAAAGCTAGCGAGCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

76.11

99.789

0.759

Multiple sequence alignment