Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   BCU28_RS07960 Genome accession   NZ_CP170022
Coordinates   1721971..1723152 (-) Length   393 a.a.
NCBI ID   WP_016790593.1    Uniprot ID   -
Organism   Vibrio cyclitrophicus strain 10N.286.45.B7     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1716971..1728152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCU28_RS07945 (BCU28_07945) - 1718010..1718912 (+) 903 WP_016768008.1 Vmh family MBL fold metallo-hydrolase -
  BCU28_RS07950 (BCU28_07950) - 1719230..1719445 (+) 216 WP_016784527.1 hypothetical protein -
  BCU28_RS07955 (BCU28_07955) - 1719801..1721849 (+) 2049 WP_016790592.1 hybrid sensor histidine kinase/response regulator -
  BCU28_RS07960 (BCU28_07960) cqsA 1721971..1723152 (-) 1182 WP_016790593.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  BCU28_RS07965 (BCU28_07965) - 1723361..1724758 (-) 1398 WP_016790594.1 PLP-dependent aminotransferase family protein -
  BCU28_RS07970 (BCU28_07970) - 1724863..1725759 (+) 897 WP_016790595.1 EamA family transporter -
  BCU28_RS07975 (BCU28_07975) - 1726066..1726938 (+) 873 WP_016790596.1 aspartoacylase -
  BCU28_RS07980 (BCU28_07980) - 1727067..1728092 (-) 1026 WP_016790597.1 CobW family GTP-binding protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43795.77 Da        Isoelectric Point: 6.1431

>NTDB_id=1054690 BCU28_RS07960 WP_016790593.1 1721971..1723152(-) (cqsA) [Vibrio cyclitrophicus strain 10N.286.45.B7]
MSDKTKNKPLPSFIEERLNFYIQDLMTQNESQKHLVLGSHPSHDAVVMQSNDYLSLSHNEQIQKAHRDAISQHDDNVVMS
AIFLQDEQSKPAFETDLANFMGMESCLLSQSGWAANIGLLQTICPPNMPVYIDFFAHMSLWEGIRAAGATGHPFMHNNMN
HLRKQIQRYGSGVIVVDSVYSTIGTVAPLRDIYEMAQEFDCALVVDESHSLGTHGSNGAGLVQALGLTNKVDFITVSLAK
TFAYRAGAILGPKRLSETLPFVAYPAIFSSTVLPQEVIRLEKTLEVIKASDDKRDTLFKRAKALTTGLKRIGFNIRSESQ
IVALECGSESNTERVRDFLEERDVFGAVFCRPATGRNKNIIRFSINADMTPRDIDHVLTACQEAFNHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=1054690 BCU28_RS07960 WP_016790593.1 1721971..1723152(-) (cqsA) [Vibrio cyclitrophicus strain 10N.286.45.B7]
ATGAGTGATAAAACTAAAAACAAACCACTACCTTCCTTTATTGAAGAACGCTTGAACTTCTATATTCAAGATCTCATGAC
ACAAAACGAAAGCCAAAAACATTTGGTATTGGGGAGTCACCCTAGCCATGACGCAGTGGTAATGCAAAGCAACGATTACC
TATCTTTGTCGCACAATGAACAAATCCAGAAAGCACATCGGGACGCAATTTCACAACACGATGACAATGTGGTGATGTCT
GCCATCTTCTTACAAGATGAACAGTCGAAACCTGCATTTGAAACCGATCTGGCTAACTTTATGGGAATGGAAAGCTGCTT
GCTCTCTCAATCAGGTTGGGCGGCTAACATTGGCTTATTGCAAACGATCTGCCCTCCTAATATGCCTGTGTATATCGATT
TTTTTGCACACATGTCCCTATGGGAGGGTATTCGTGCCGCTGGTGCAACTGGCCACCCATTTATGCACAACAACATGAAT
CACCTTCGTAAACAGATTCAGCGTTATGGTTCGGGTGTGATTGTAGTCGACTCGGTTTACAGCACCATAGGTACGGTAGC
CCCACTCCGCGACATCTACGAAATGGCGCAAGAGTTTGACTGTGCCTTGGTCGTCGATGAATCCCATTCACTAGGCACTC
ATGGTTCAAATGGTGCTGGTTTGGTTCAGGCATTAGGGCTGACGAACAAAGTGGATTTCATTACCGTCAGCTTGGCCAAA
ACCTTTGCCTATCGCGCTGGCGCTATACTCGGCCCTAAGCGATTATCGGAGACATTACCCTTTGTCGCTTACCCTGCTAT
TTTTAGCTCGACCGTACTACCACAAGAAGTTATCCGCTTAGAAAAGACTTTAGAGGTTATTAAAGCCTCTGATGATAAGC
GAGACACCTTGTTCAAACGCGCTAAAGCACTGACTACAGGGCTAAAGCGAATCGGTTTTAACATTCGCAGTGAATCTCAG
ATTGTGGCATTAGAATGTGGCAGTGAAAGCAACACTGAGCGTGTACGTGACTTCTTAGAAGAGCGTGACGTGTTTGGTGC
GGTATTTTGTCGGCCAGCAACAGGCAGAAACAAAAACATCATCCGCTTTTCGATTAACGCAGACATGACGCCGCGGGACA
TCGACCATGTTCTCACAGCATGCCAAGAGGCTTTTAATCACCCTGACTTAGAGTTCGTATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

55.556

98.473

0.547

Multiple sequence alignment