Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   R8588_RS03355 Genome accession   NZ_AP028401
Coordinates   635549..635986 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain BCH-11527     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 630549..640986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8588_RS03330 - 631170..632192 (+) 1023 Protein_642 sensor histidine kinase KdpD -
  R8588_RS03335 (B11527_06610) - 632216..632968 (+) 753 WP_224385644.1 DUF4118 domain-containing protein -
  R8588_RS03340 (B11527_06620) uvrB 632963..634936 (-) 1974 WP_002855027.1 excinuclease ABC subunit UvrB -
  R8588_RS03345 (B11527_06630) - 635090..635320 (+) 231 WP_002852327.1 hypothetical protein -
  R8588_RS03350 (B11527_06640) - 635310..635552 (+) 243 WP_002854947.1 hypothetical protein -
  R8588_RS03355 (B11527_06650) Cj0683 635549..635986 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  R8588_RS03360 (B11527_06660) priA 635968..637821 (+) 1854 WP_002888182.1 primosomal protein N' -
  R8588_RS03365 (B11527_06670) cipA 637831..639225 (-) 1395 WP_002888181.1 DUF2972 domain-containing protein -
  R8588_RS03370 (B11527_06680) ispG 639371..640444 (+) 1074 WP_002854766.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=105465 R8588_RS03355 WP_002852324.1 635549..635986(+) (Cj0683) [Campylobacter jejuni strain BCH-11527]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=105465 R8588_RS03355 WP_002852324.1 635549..635986(+) (Cj0683) [Campylobacter jejuni strain BCH-11527]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTGTCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAACGCCAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment