Detailed information NTG1054611

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BCU92_RS10865
• Genome accession: NZ_CP170017
• Coordinates: 2333728..2334708 (+)
• Length: 326 a.a.
• NCBI ID: WP_010435803.1
• Uniprot ID: A0AAN0N9Q1
• Organism: Vibrio cyclitrophicus strain 10N.286.52.C10
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2328728..2339708

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BCU92_RS10835 (BCU92_10835)	ispD	2328963..2329664 (+)	702	WP_010435790.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
BCU92_RS10840 (BCU92_10840)	ispF	2329667..2330146 (+)	480	WP_010435793.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BCU92_RS10845 (BCU92_10845)	truD	2330169..2331215 (+)	1047	WP_010435794.1	tRNA pseudouridine(13) synthase TruD	-
BCU92_RS10850 (BCU92_10850)	surE	2331291..2332034 (+)	744	WP_010435796.1	5'/3'-nucleotidase SurE	-
BCU92_RS10855 (BCU92_10855)	-	2332035..2332661 (+)	627	WP_010435798.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
BCU92_RS10860 (BCU92_10860)	nlpD	2332697..2333629 (+)	933	WP_016768192.1	murein hydrolase activator NlpD	-
BCU92_RS10865 (BCU92_10865)	rpoS	2333728..2334708 (+)	981	WP_010435803.1	RNA polymerase sigma factor RpoS	Regulator
BCU92_RS10870 (BCU92_10870)	mutS	2334818..2337379 (-)	2562	WP_016768193.1	DNA mismatch repair protein MutS	-
BCU92_RS10875 (BCU92_10875)	pncC	2337503..2337997 (+)	495	WP_016768194.1	nicotinamide-nucleotide amidase	-
BCU92_RS10880 (BCU92_10880)	recA	2338137..2339177 (+)	1041	WP_010435812.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 37267.52 Da
• Isoelectric Point: 5.2707

>NTDB_id=1054611 BCU92_RS10865 WP_010435803.1 2333728..2334708(+) (rpoS) [Vibrio cyclitrophicus strain 10N.286.52.C10]
MSISNAVTKEEFDLNQVTTESETLGKAKRTVTKKTEAKEEAEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIATKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDSDIKNSLIFWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREICLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide

• Length: 981 bp

>NTDB_id=1054611 BCU92_RS10865 WP_010435803.1 2333728..2334708(+) (rpoS) [Vibrio cyclitrophicus strain 10N.286.52.C10]
ATGAGTATAAGCAATGCAGTAACCAAAGAAGAGTTTGATCTTAACCAAGTAACCACGGAATCGGAAACACTTGGAAAAGC
AAAACGAACAGTCACTAAGAAAACCGAAGCGAAAGAAGAAGCTGAAGTTACGTCTAAAAGTTTAGATGCTACTCAACTCT
ACTTAGGCGAAATTGGTTTCTCACCACTACTAACCGCTGAAGAAGAAGTGCTTTATGCACGTCGAGCTCTACGCGGTGAT
GAAGCGGCCCGCAAACGCATGATTGAAAGTAACCTGCGTTTGGTGGTTAAAATATCTCGTCGTTATAGCAACCGTGGTTT
GGCACTTCTCGATCTAATTGAAGAAGGCAACCTAGGCTTGATTCGCGCCGTAGAGAAGTTTGACCCAGAGCGAGGTTTCC
GCTTTTCAACTTACGCGACATGGTGGATTCGTCAAACCATTGAACGTGCTTTAATGAATCAGACTCGCACCATCCGTTTG
CCAATCCATGTTGTGAAAGAGCTGAACATCTACCTACGTACAGCAAGAGAGTTATCACAAAAGCTTGACCATGAACCAAC
GGCTGAAGAAATTGCTACTAAGCTAGACAAGCCAGTTGGTGATGTGAGCAAGATGCTTCGTTTAAACGAGCGAGTGAGCT
CCGTTGATACGCCAATTGGTGGTGACGGTGAGAAAGCACTGTTGGATATTATTCCGGACATCAACAATTCCGATCCTGAG
GTTTCAACTCAAGATAGCGATATCAAGAACTCGTTGATTTTCTGGCTAGATGAGCTGAACCCGAAACAGAAAGAGGTGCT
TGCACGTCGCTTTGGACTACTTGGCTATGAACCGTCAACGTTAGAAGAAGTAGGCCGTGAAATCTGCCTGACTCGTGAAC
GTGTTCGTCAAATCCAAGTTGAAGGTCTTCGCCGTCTACGAGAGATTCTGATCAAGCAAGGTCTGAACATGGAAAACCTG
TTTAACGTTGAAAACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (49-82)

• Sigma-70 region 2 (Sigma70_r2) (87-156)

• Sigma-70, region 4 (Sigma70_r4) (255-308)

• Sigma-70 region 3 (Sigma70_r3) (167-240)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.437	100	0.834