Detailed information NTG1054602

Bioinformatically predicted

Overview

• Name: pilM
• Type: Machinery gene
• Locus tag: BCU92_RS09665
• Genome accession: NZ_CP170017
• Coordinates: 2121473..2122498 (+)
• Length: 341 a.a.
• NCBI ID: WP_016787692.1
• Uniprot ID: A0AAN0LM26
• Organism: Vibrio cyclitrophicus strain 10N.286.52.C10
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2116473..2127498

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BCU92_RS09650 (BCU92_09650)	-	2116824..2117552 (-)	729	WP_010435300.1	glutathione peroxidase	-
BCU92_RS09655 (BCU92_09655)	oxyR	2117774..2118667 (+)	894	WP_010435297.1	DNA-binding transcriptional regulator OxyR	-
BCU92_RS09660 (BCU92_09660)	-	2118763..2121321 (-)	2559	WP_010435294.1	penicillin-binding protein 1A	-
BCU92_RS09665 (BCU92_09665)	pilM	2121473..2122498 (+)	1026	WP_016787692.1	type IV pilus assembly protein PilM	Machinery gene
BCU92_RS09670 (BCU92_09670)	pilN	2122482..2123096 (+)	615	WP_010435288.1	PilN domain-containing protein	Machinery gene
BCU92_RS09675 (BCU92_09675)	pilO	2123089..2123718 (+)	630	WP_010435284.1	type 4a pilus biogenesis protein PilO	Machinery gene
BCU92_RS09680 (BCU92_09680)	pilP	2123705..2124223 (+)	519	WP_016787693.1	pilus assembly protein PilP	Machinery gene
BCU92_RS09685 (BCU92_09685)	pilQ	2124283..2125974 (+)	1692	WP_016787694.1	type IV pilus secretin PilQ	Machinery gene
BCU92_RS09690 (BCU92_09690)	aroK	2126151..2126669 (+)	519	WP_009848907.1	shikimate kinase AroK	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 38128.77 Da
• Isoelectric Point: 6.8348

>NTDB_id=1054602 BCU92_RS09665 WP_016787692.1 2121473..2122498(+) (pilM) [Vibrio cyclitrophicus strain 10N.286.52.C10]
MGSSLITGIDINHHSIKAVVLKPVGESYALVGYKELPISDDIFTANHTLEYQKTVKKLKELRKGLPFGSRNVAISVPDNT
VISKVLQIESELEDREKEFSIYQTFAHQSPFPIEELSLDFVKLEDKRFGKGSTSSYQVYATRKEVVDSRADALTKAGFKP
IVVDTQAHGLLNIWQLASHLYPEKKNWLLVDVGVDQTSLGIIPQGSAPFYKDIAFGIQDLCSTGNSMDMEGGFSNVEEKH
KFIVNLIEKLKRQLQLYSSVNALQPISGIWLMGEGASMPMVVEELERHFQLSCESLNPLSLFENKVAKKRRLPMDWQHFG
IAAGMAMSGLKWQGEKHVASN

Nucleotide

• Length: 1026 bp

>NTDB_id=1054602 BCU92_RS09665 WP_016787692.1 2121473..2122498(+) (pilM) [Vibrio cyclitrophicus strain 10N.286.52.C10]
ATGGGTTCATCATTAATTACAGGTATAGATATAAATCACCACAGCATCAAAGCCGTGGTACTAAAACCCGTTGGGGAGTC
GTATGCCCTGGTGGGATACAAAGAGCTGCCGATTTCGGACGACATTTTTACAGCTAACCATACTTTGGAGTATCAGAAAA
CTGTTAAGAAACTCAAAGAACTTAGGAAAGGGCTGCCTTTTGGAAGCCGCAACGTCGCTATTTCGGTACCGGATAACACG
GTGATCAGCAAAGTACTGCAAATAGAGAGCGAATTAGAAGATAGAGAAAAGGAGTTCTCGATCTATCAAACCTTTGCTCA
TCAATCTCCCTTTCCTATCGAGGAGCTGAGTTTAGATTTTGTAAAGCTAGAAGACAAACGATTTGGTAAAGGATCAACAA
GCAGCTATCAAGTGTATGCGACTCGTAAAGAGGTGGTTGATAGCCGAGCTGACGCGCTAACGAAAGCAGGGTTTAAGCCC
ATCGTTGTCGACACTCAGGCCCATGGTTTACTCAACATTTGGCAATTGGCTTCGCATTTGTATCCAGAAAAAAAGAATTG
GCTGTTGGTGGATGTTGGCGTTGATCAAACTTCATTAGGCATTATTCCCCAAGGTTCAGCGCCATTTTATAAAGATATTG
CCTTTGGCATTCAAGATCTTTGCAGTACGGGTAACTCGATGGATATGGAGGGTGGGTTTAGTAACGTTGAGGAGAAGCAT
AAGTTTATTGTCAATTTGATTGAAAAACTCAAGCGTCAGTTACAGCTCTATTCATCGGTCAATGCGCTTCAACCTATCTC
AGGAATTTGGCTAATGGGCGAAGGAGCAAGTATGCCGATGGTCGTTGAAGAGTTAGAGCGACATTTTCAGTTAAGTTGTG
AGTCTTTGAACCCCCTATCTTTGTTTGAGAATAAGGTCGCGAAAAAACGTCGATTACCCATGGATTGGCAACATTTTGGT
ATTGCAGCAGGCATGGCGATGAGTGGACTCAAGTGGCAGGGAGAAAAGCATGTTGCATCAAATTAA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (8-220)

• Type IV pilus assembly protein PilM; (PilM_2) (242-328)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilM	Vibrio cholerae strain A1552	53.392	99.413	0.531
pilM	Vibrio campbellii strain DS40M4	47.661	100	0.478