Detailed information NTG1054569

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BCU99_RS12875
• Genome accession: NZ_CP170015
• Coordinates: 2898329..2899309 (-)
• Length: 326 a.a.
• NCBI ID: WP_010435803.1
• Uniprot ID: A0AAN0N9Q1
• Organism: Vibrio cyclitrophicus strain 10N.286.52.F6
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2893329..2904309

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BCU99_RS12860 (BCU99_12860)	recA	2893860..2894900 (-)	1041	WP_010435812.1	recombinase RecA	Machinery gene
BCU99_RS12865 (BCU99_12865)	pncC	2895040..2895534 (-)	495	WP_016768194.1	nicotinamide-nucleotide amidase	-
BCU99_RS12870 (BCU99_12870)	mutS	2895658..2898219 (+)	2562	WP_016768193.1	DNA mismatch repair protein MutS	-
BCU99_RS12875 (BCU99_12875)	rpoS	2898329..2899309 (-)	981	WP_010435803.1	RNA polymerase sigma factor RpoS	Regulator
BCU99_RS12880 (BCU99_12880)	nlpD	2899408..2900340 (-)	933	WP_016768192.1	murein hydrolase activator NlpD	-
BCU99_RS12885 (BCU99_12885)	-	2900376..2901002 (-)	627	WP_010435798.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
BCU99_RS12890 (BCU99_12890)	surE	2901003..2901746 (-)	744	WP_010435796.1	5'/3'-nucleotidase SurE	-
BCU99_RS12895 (BCU99_12895)	truD	2901822..2902868 (-)	1047	WP_010435794.1	tRNA pseudouridine(13) synthase TruD	-
BCU99_RS12900 (BCU99_12900)	ispF	2902891..2903370 (-)	480	WP_010435793.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BCU99_RS12905 (BCU99_12905)	ispD	2903373..2904074 (-)	702	WP_010435790.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 37267.52 Da
• Isoelectric Point: 5.2707

>NTDB_id=1054569 BCU99_RS12875 WP_010435803.1 2898329..2899309(-) (rpoS) [Vibrio cyclitrophicus strain 10N.286.52.F6]
MSISNAVTKEEFDLNQVTTESETLGKAKRTVTKKTEAKEEAEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIATKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDSDIKNSLIFWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREICLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide

• Length: 981 bp

>NTDB_id=1054569 BCU99_RS12875 WP_010435803.1 2898329..2899309(-) (rpoS) [Vibrio cyclitrophicus strain 10N.286.52.F6]
ATGAGTATAAGCAATGCAGTAACCAAAGAAGAGTTCGATCTTAACCAAGTAACCACGGAATCGGAAACACTTGGAAAAGC
AAAACGAACAGTCACTAAGAAAACCGAAGCGAAAGAAGAAGCTGAAGTTACGTCTAAAAGTTTAGATGCTACTCAACTCT
ACTTAGGCGAAATTGGTTTCTCACCACTACTAACCGCTGAAGAAGAAGTGCTTTATGCACGTCGAGCTCTACGCGGTGAT
GAAGCGGCCCGCAAACGCATGATTGAAAGTAACCTGCGTTTGGTGGTTAAAATATCTCGTCGTTATAGCAACCGTGGTTT
GGCACTTCTCGATCTAATTGAAGAAGGCAACCTAGGCTTGATTCGCGCCGTAGAGAAGTTTGACCCAGAGCGAGGTTTCC
GCTTTTCAACTTACGCGACATGGTGGATTCGTCAAACCATTGAACGTGCTTTAATGAATCAGACTCGCACCATCCGTTTG
CCAATCCATGTTGTGAAAGAGCTGAACATCTACCTACGTACAGCAAGAGAGTTATCACAAAAGCTTGACCATGAACCAAC
GGCTGAAGAAATTGCTACTAAGCTAGACAAGCCAGTTGGTGATGTGAGCAAGATGCTTCGTTTAAACGAGCGAGTGAGCT
CCGTTGATACGCCAATTGGTGGTGACGGTGAGAAAGCACTGTTGGATATTATTCCGGACATCAACAATTCCGATCCTGAG
GTTTCAACTCAAGATAGCGATATCAAGAACTCGTTGATTTTCTGGCTAGATGAGCTGAACCCGAAACAGAAAGAGGTGCT
TGCACGTCGCTTTGGACTACTTGGCTATGAACCGTCAACGTTAGAAGAAGTAGGCCGTGAAATCTGCCTGACTCGTGAAC
GTGTTCGTCAAATCCAAGTTGAAGGTCTTCGCCGTCTACGAGAGATTCTGATCAAGCAAGGTCTGAATATGGAAAACCTG
TTTAACGTTGAAAACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (49-82)

• Sigma-70 region 2 (Sigma70_r2) (87-156)

• Sigma-70, region 4 (Sigma70_r4) (255-308)

• Sigma-70 region 3 (Sigma70_r3) (167-240)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.437	100	0.834