Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   R9B17_RS07280 Genome accession   NZ_AP028399
Coordinates   1427609..1427920 (-) Length   103 a.a.
NCBI ID   WP_002862131.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11515     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1422609..1432920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R9B17_RS07260 (B11515_14400) ctsE 1423478..1425037 (-) 1560 WP_032586875.1 GspE/PulE family protein Machinery gene
  R9B17_RS07265 (B11515_14410) ctsX 1425027..1425614 (-) 588 WP_032584555.1 transformation system protein Machinery gene
  R9B17_RS07270 (B11515_14420) ctsP 1425618..1426226 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  R9B17_RS07275 (B11515_14430) ctsD 1426219..1427631 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R9B17_RS07280 (B11515_14440) ctsR 1427609..1427920 (-) 312 WP_002862131.1 hypothetical protein Machinery gene
  R9B17_RS07285 (B11515_14450) nifJ 1427944..1431504 (-) 3561 WP_032586879.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  R9B17_RS07290 (B11515_14460) - 1431597..1432238 (-) 642 WP_002867242.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12449.35 Da        Isoelectric Point: 6.4656

>NTDB_id=105455 R9B17_RS07280 WP_002862131.1 1427609..1427920(-) (ctsR) [Campylobacter jejuni strain BCH-11515]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=105455 R9B17_RS07280 WP_002862131.1 1427609..1427920(-) (ctsR) [Campylobacter jejuni strain BCH-11515]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99

Multiple sequence alignment