Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACNUD4_RS11520 Genome accession   NZ_OZ197090
Coordinates   2249097..2249870 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus isolate 23S01467-1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2244097..2254870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUD4_RS11500 trmFO 2244441..2245748 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  ACNUD4_RS11505 xerC 2246165..2247061 (+) 897 WP_001015606.1 tyrosine recombinase XerC -
  ACNUD4_RS11510 hslV 2247058..2247603 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  ACNUD4_RS11515 hslU 2247669..2249072 (+) 1404 WP_416743135.1 ATP-dependent protease ATPase subunit HslU -
  ACNUD4_RS11520 codY 2249097..2249870 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACNUD4_RS11525 - 2249921..2250013 (+) 93 WP_001790530.1 hypothetical protein -
  ACNUD4_RS11530 rpsB 2250212..2250979 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  ACNUD4_RS11535 - 2251013..2251126 (+) 114 WP_001789890.1 hypothetical protein -
  ACNUD4_RS11540 tsf 2251161..2252042 (+) 882 WP_000201387.1 translation elongation factor Ts -
  ACNUD4_RS11545 pyrH 2252179..2252901 (+) 723 WP_000057330.1 UMP kinase -
  ACNUD4_RS11550 frr 2252920..2253474 (+) 555 WP_001280006.1 ribosome recycling factor -
  ACNUD4_RS11555 - 2253847..2254617 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=1054504 ACNUD4_RS11520 WP_000055337.1 2249097..2249870(+) (codY) [Staphylococcus aureus isolate 23S01467-1]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=1054504 ACNUD4_RS11520 WP_000055337.1 2249097..2249870(+) (codY) [Staphylococcus aureus isolate 23S01467-1]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTTATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAG

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428

Multiple sequence alignment