Detailed information NTG1054504

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BCV09_RS02090
• Genome accession: NZ_CP170013
• Coordinates: 411770..412750 (+)
• Length: 326 a.a.
• NCBI ID: WP_412495149.1
• Uniprot ID: -
• Organism: Vibrio cyclitrophicus strain 10N.286.54.C7
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 406770..417750

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BCV09_RS02060 (BCV09_02060)	ispD	407005..407706 (+)	702	WP_010435790.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
BCV09_RS02065 (BCV09_02065)	ispF	407709..408188 (+)	480	WP_016783764.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BCV09_RS02070 (BCV09_02070)	truD	408211..409257 (+)	1047	WP_010435794.1	tRNA pseudouridine(13) synthase TruD	-
BCV09_RS02075 (BCV09_02075)	surE	409333..410076 (+)	744	WP_010435796.1	5'/3'-nucleotidase SurE	-
BCV09_RS02080 (BCV09_02080)	-	410077..410703 (+)	627	WP_010435798.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
BCV09_RS02085 (BCV09_02085)	nlpD	410739..411671 (+)	933	WP_016768192.1	murein hydrolase activator NlpD	-
BCV09_RS02090 (BCV09_02090)	rpoS	411770..412750 (+)	981	WP_412495149.1	RNA polymerase sigma factor RpoS	Regulator
BCV09_RS02095 (BCV09_02095)	mutS	412860..415421 (-)	2562	WP_016768193.1	DNA mismatch repair protein MutS	-
BCV09_RS02100 (BCV09_02100)	pncC	415545..416039 (+)	495	WP_016768194.1	nicotinamide-nucleotide amidase	-
BCV09_RS02105 (BCV09_02105)	recA	416179..417219 (+)	1041	WP_010435812.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 37266.53 Da
• Isoelectric Point: 5.4309

>NTDB_id=1054504 BCV09_RS02090 WP_412495149.1 411770..412750(+) (rpoS) [Vibrio cyclitrophicus strain 10N.286.54.C7]
MSISNAVTKEEFDLNQVTTESETLGKAKRTVTKKTEAKEEAEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIATKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSNPE
VSTQDSDIKNSLIFWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREICLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide

• Length: 981 bp

>NTDB_id=1054504 BCV09_RS02090 WP_412495149.1 411770..412750(+) (rpoS) [Vibrio cyclitrophicus strain 10N.286.54.C7]
ATGAGTATAAGCAATGCAGTAACCAAAGAAGAGTTCGATCTTAACCAAGTAACCACGGAATCGGAAACACTTGGAAAAGC
AAAACGAACAGTCACTAAGAAAACCGAAGCGAAAGAAGAAGCTGAAGTTACGTCTAAAAGTTTAGATGCTACTCAACTCT
ACTTAGGCGAAATTGGTTTCTCACCACTACTAACCGCTGAAGAAGAAGTGCTTTATGCACGTCGAGCTCTACGCGGTGAT
GAAGCGGCCCGCAAACGCATGATTGAAAGTAACCTGCGTTTGGTGGTTAAAATATCTCGTCGTTATAGCAACCGTGGTTT
GGCACTTCTCGATCTAATTGAAGAAGGCAACCTAGGCTTGATTCGCGCCGTAGAGAAGTTTGACCCAGAGCGAGGTTTCC
GCTTTTCAACTTACGCGACATGGTGGATTCGTCAAACCATTGAACGTGCTTTAATGAATCAGACTCGCACCATCCGTTTG
CCAATCCATGTTGTGAAAGAGCTGAACATCTACCTACGTACAGCAAGAGAGTTATCACAAAAGCTTGACCATGAACCAAC
GGCTGAAGAAATTGCTACTAAGCTAGACAAGCCAGTTGGTGATGTGAGCAAGATGCTTCGTTTAAACGAGCGAGTGAGCT
CCGTTGATACGCCAATTGGTGGTGACGGTGAGAAAGCACTGTTGGATATTATTCCGGACATCAACAATTCCAATCCTGAG
GTTTCAACTCAAGATAGCGATATCAAGAACTCGTTGATTTTCTGGCTAGATGAGCTGAACCCGAAACAGAAAGAGGTGCT
TGCACGTCGCTTTGGACTACTTGGCTATGAACCGTCAACGTTAGAAGAAGTAGGCCGTGAAATCTGCCTGACTCGTGAAC
GTGTTCGTCAAATCCAAGTTGAAGGTCTTCGCCGTCTACGAGAGATTCTGATCAAGCAAGGTCTGAACATGGAAAACCTG
TTTAACGTTGAAAACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (49-82)

• Sigma-70 region 2 (Sigma70_r2) (87-156)

• Sigma-70, region 4 (Sigma70_r4) (255-308)

• Sigma-70 region 3 (Sigma70_r3) (167-240)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.138	100	0.831