Detailed information NTG1054478

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BCV14_RS13280
• Genome accession: NZ_CP170011
• Coordinates: 3010526..3011506 (-)
• Length: 326 a.a.
• NCBI ID: WP_010435803.1
• Uniprot ID: A0AAN0N9Q1
• Organism: Vibrio cyclitrophicus strain 10N.286.54.E4
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3005526..3016506

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BCV14_RS13265 (BCV14_13265)	recA	3006057..3007097 (-)	1041	WP_010435812.1	recombinase RecA	Machinery gene
BCV14_RS13270 (BCV14_13270)	pncC	3007237..3007731 (-)	495	WP_016768194.1	nicotinamide-nucleotide amidase	-
BCV14_RS13275 (BCV14_13275)	mutS	3007855..3010416 (+)	2562	WP_102363588.1	DNA mismatch repair protein MutS	-
BCV14_RS13280 (BCV14_13280)	rpoS	3010526..3011506 (-)	981	WP_010435803.1	RNA polymerase sigma factor RpoS	Regulator
BCV14_RS13285 (BCV14_13285)	nlpD	3011605..3012537 (-)	933	WP_102363589.1	murein hydrolase activator NlpD	-
BCV14_RS13290 (BCV14_13290)	-	3012573..3013199 (-)	627	WP_010435798.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
BCV14_RS13295 (BCV14_13295)	surE	3013200..3013943 (-)	744	WP_010435796.1	5'/3'-nucleotidase SurE	-
BCV14_RS13300 (BCV14_13300)	truD	3014019..3015065 (-)	1047	WP_010435794.1	tRNA pseudouridine(13) synthase TruD	-
BCV14_RS13305 (BCV14_13305)	ispF	3015088..3015567 (-)	480	WP_010435793.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BCV14_RS13310 (BCV14_13310)	ispD	3015570..3016271 (-)	702	WP_010435790.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 37267.52 Da
• Isoelectric Point: 5.2707

>NTDB_id=1054478 BCV14_RS13280 WP_010435803.1 3010526..3011506(-) (rpoS) [Vibrio cyclitrophicus strain 10N.286.54.E4]
MSISNAVTKEEFDLNQVTTESETLGKAKRTVTKKTEAKEEAEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIATKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDSDIKNSLIFWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREICLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide

• Length: 981 bp

>NTDB_id=1054478 BCV14_RS13280 WP_010435803.1 3010526..3011506(-) (rpoS) [Vibrio cyclitrophicus strain 10N.286.54.E4]
ATGAGTATAAGCAATGCAGTAACCAAAGAAGAGTTCGATCTTAACCAAGTAACCACGGAATCGGAAACACTTGGAAAAGC
AAAACGAACAGTCACTAAGAAAACCGAAGCGAAAGAAGAAGCTGAAGTTACGTCTAAAAGTTTAGATGCTACTCAACTCT
ACTTAGGCGAAATTGGTTTCTCACCACTACTAACCGCTGAAGAAGAAGTGCTTTATGCACGTCGAGCTCTACGCGGTGAT
GAAGCGGCCCGCAAACGCATGATTGAAAGTAACCTGCGTTTGGTGGTTAAAATATCTCGTCGTTATAGCAACCGTGGTTT
GGCACTTCTCGATCTAATTGAAGAAGGCAACCTAGGCTTGATTCGCGCCGTAGAGAAGTTTGACCCAGAGCGAGGTTTCC
GCTTTTCAACTTACGCGACATGGTGGATTCGTCAAACCATTGAACGTGCTTTAATGAATCAGACTCGCACCATCCGTTTG
CCAATCCATGTTGTGAAAGAGCTGAACATCTACCTACGTACAGCAAGAGAGTTATCACAAAAGCTTGACCATGAACCAAC
GGCTGAAGAAATTGCTACTAAGCTAGACAAGCCAGTTGGTGATGTGAGCAAGATGCTTCGTTTAAACGAGCGAGTGAGCT
CCGTTGATACGCCAATTGGTGGTGACGGTGAGAAAGCACTGTTGGATATTATTCCGGACATCAACAATTCCGATCCTGAG
GTTTCAACTCAAGATAGCGATATCAAGAACTCGTTGATTTTCTGGCTAGATGAGCTGAACCCGAAACAGAAAGAGGTGCT
TGCACGTCGCTTTGGACTACTTGGCTATGAACCGTCAACGTTAGAAGAAGTAGGCCGTGAAATCTGCCTGACTCGTGAAC
GTGTTCGTCAAATCCAAGTTGAAGGTCTTCGCCGTCTACGAGAGATTCTGATCAAGCAAGGTCTGAACATGGAAAACCTG
TTTAACGTTGAAAACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (49-82)

• Sigma-70 region 2 (Sigma70_r2) (87-156)

• Sigma-70, region 4 (Sigma70_r4) (255-308)

• Sigma-70 region 3 (Sigma70_r3) (167-240)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.437	100	0.834