Detailed information NTG1054428

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BCV18_RS10260
• Genome accession: NZ_CP170009
• Coordinates: 2216139..2217119 (+)
• Length: 326 a.a.
• NCBI ID: WP_010435803.1
• Uniprot ID: A0AAN0N9Q1
• Organism: Vibrio cyclitrophicus strain 10N.286.54.F2
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2211139..2222119

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BCV18_RS10230 (BCV18_10230)	ispD	2211374..2212075 (+)	702	WP_010435790.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
BCV18_RS10235 (BCV18_10235)	ispF	2212078..2212557 (+)	480	WP_010435793.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BCV18_RS10240 (BCV18_10240)	truD	2212580..2213626 (+)	1047	WP_010435794.1	tRNA pseudouridine(13) synthase TruD	-
BCV18_RS10245 (BCV18_10245)	surE	2213702..2214445 (+)	744	WP_010435796.1	5'/3'-nucleotidase SurE	-
BCV18_RS10250 (BCV18_10250)	-	2214446..2215072 (+)	627	WP_010435798.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
BCV18_RS10255 (BCV18_10255)	nlpD	2215108..2216040 (+)	933	WP_016768192.1	murein hydrolase activator NlpD	-
BCV18_RS10260 (BCV18_10260)	rpoS	2216139..2217119 (+)	981	WP_010435803.1	RNA polymerase sigma factor RpoS	Regulator
BCV18_RS10265 (BCV18_10265)	mutS	2217229..2219790 (-)	2562	WP_016768193.1	DNA mismatch repair protein MutS	-
BCV18_RS10270 (BCV18_10270)	pncC	2219914..2220408 (+)	495	WP_016768194.1	nicotinamide-nucleotide amidase	-
BCV18_RS10275 (BCV18_10275)	recA	2220548..2221588 (+)	1041	WP_010435812.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 37267.52 Da
• Isoelectric Point: 5.2707

>NTDB_id=1054428 BCV18_RS10260 WP_010435803.1 2216139..2217119(+) (rpoS) [Vibrio cyclitrophicus strain 10N.286.54.F2]
MSISNAVTKEEFDLNQVTTESETLGKAKRTVTKKTEAKEEAEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIATKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDSDIKNSLIFWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREICLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide

• Length: 981 bp

>NTDB_id=1054428 BCV18_RS10260 WP_010435803.1 2216139..2217119(+) (rpoS) [Vibrio cyclitrophicus strain 10N.286.54.F2]
ATGAGTATAAGCAATGCAGTAACCAAAGAAGAGTTCGATCTTAACCAAGTAACCACGGAATCGGAAACACTTGGAAAAGC
AAAACGAACAGTCACTAAGAAAACCGAAGCGAAAGAAGAAGCTGAAGTTACGTCTAAAAGTTTAGATGCTACTCAACTCT
ACTTAGGCGAAATTGGTTTCTCACCACTACTAACCGCTGAAGAAGAAGTGCTTTATGCACGTCGAGCTCTACGCGGTGAT
GAAGCGGCCCGCAAACGCATGATTGAAAGTAACCTGCGTTTGGTGGTTAAAATATCTCGTCGTTATAGCAACCGTGGTTT
GGCACTTCTCGATCTAATTGAAGAAGGCAACCTAGGCTTGATTCGCGCCGTAGAGAAGTTTGACCCAGAGCGAGGTTTCC
GCTTTTCAACTTACGCGACATGGTGGATTCGTCAAACCATTGAACGTGCTTTAATGAATCAGACTCGCACCATCCGTTTG
CCAATCCATGTTGTGAAAGAGCTGAACATCTACCTACGTACAGCAAGAGAGTTATCACAAAAGCTTGACCATGAACCAAC
GGCTGAAGAAATTGCTACTAAGCTAGACAAGCCAGTTGGTGATGTGAGCAAGATGCTTCGTTTAAACGAGCGAGTGAGCT
CCGTTGATACGCCAATTGGTGGTGACGGTGAGAAAGCACTGTTGGATATTATTCCGGACATCAACAATTCCGATCCTGAG
GTTTCAACTCAAGATAGCGATATCAAGAACTCGTTGATTTTCTGGCTAGATGAGCTGAACCCGAAACAGAAAGAGGTGCT
TGCACGTCGCTTTGGACTACTTGGCTATGAACCGTCAACGTTAGAAGAAGTAGGCCGTGAAATCTGCCTGACTCGTGAAC
GTGTTCGTCAAATCCAAGTTGAAGGTCTTCGCCGTCTACGAGAGATTCTGATCAAGCAAGGTCTGAATATGGAAAACCTG
TTTAACGTTGAAAACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (49-82)

• Sigma-70 region 2 (Sigma70_r2) (87-156)

• Sigma-70, region 4 (Sigma70_r4) (255-308)

• Sigma-70 region 3 (Sigma70_r3) (167-240)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.437	100	0.834