Detailed information NTG1054418

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: BCV18_RS08955
• Genome accession: NZ_CP170009
• Coordinates: 1974564..1975568 (-)
• Length: 334 a.a.
• NCBI ID: WP_010435348.1
• Uniprot ID: A0AAN0LNA0
• Organism: Vibrio cyclitrophicus strain 10N.286.54.F2
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 1969564..1980568

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BCV18_RS08925 (BCV18_08925)	zapB	1969734..1969976 (+)	243	WP_010435362.1	cell division protein ZapB	-
BCV18_RS08930 (BCV18_08930)	rraA	1970083..1970601 (-)	519	WP_010435359.1	ribonuclease E activity regulator RraA	-
BCV18_RS08935 (BCV18_08935)	-	1970675..1971592 (-)	918	WP_010435357.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
BCV18_RS08940 (BCV18_08940)	hslU	1971748..1973088 (-)	1341	WP_016767976.1	HslU--HslV peptidase ATPase subunit	-
BCV18_RS08945 (BCV18_08945)	hslV	1973147..1973695 (-)	549	WP_004729692.1	ATP-dependent protease subunit HslV	-
BCV18_RS08950 (BCV18_08950)	-	1973902..1974441 (-)	540	WP_010435351.1	SPOR domain-containing protein	-
BCV18_RS08955 (BCV18_08955)	cytR	1974564..1975568 (-)	1005	WP_010435348.1	DNA-binding transcriptional regulator CytR	Regulator
BCV18_RS08960 (BCV18_08960)	priA	1975809..1978010 (-)	2202	WP_010435346.1	primosomal protein N'	-
BCV18_RS08965 (BCV18_08965)	rpmE	1978342..1978560 (+)	219	WP_407834094.1	50S ribosomal protein L31	-
BCV18_RS08970 (BCV18_08970)	-	1978892..1980181 (+)	1290	WP_016783694.1	malic enzyme-like NAD(P)-binding protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 36507.05 Da
• Isoelectric Point: 6.4911

>NTDB_id=1054418 BCV18_RS08955 WP_010435348.1 1974564..1975568(-) (cytR) [Vibrio cyclitrophicus strain 10N.286.54.F2]
MATMKDVAQLAGVSTATVSRALMNPEKVSVSTRKRVEAAVLEAGYSPNTLARNLRRNESKTIITIVPDICDPYFAEIIRG
IEDAAVENDYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDHPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLAQLGHKRIAQISGPISATLCKFRQQGYQQALRRAGVSMNPAYSTVGDFTFEAGAQAVRQLLALPEQPTA
IFCHNDAMAIGAIQEAKKLGLRVPQDLSIVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLDLLKGNDVQAGSRLLE
AKLVVRGSTAPPRI

Nucleotide

• Length: 1005 bp

>NTDB_id=1054418 BCV18_RS08955 WP_010435348.1 1974564..1975568(-) (cytR) [Vibrio cyclitrophicus strain 10N.286.54.F2]
ATGGCGACAATGAAGGATGTTGCCCAGCTAGCAGGCGTCTCAACAGCAACGGTATCACGTGCATTGATGAACCCTGAAAA
AGTCTCTGTTTCTACTCGTAAGCGAGTCGAAGCGGCAGTGCTAGAAGCTGGATACTCACCCAACACATTAGCTAGAAACT
TACGTCGCAACGAATCAAAAACCATCATCACTATCGTTCCTGATATCTGTGACCCTTATTTTGCTGAAATCATTCGTGGT
ATCGAAGACGCCGCAGTAGAAAATGATTACCTTGTTCTACTGGGTGATAGCGGCCAGCAAAAGAAGCGCGAGTCTTCTTT
TGTTAACTTGGTTTTCACCAAGCAAGCTGACGGTATGCTGCTGCTTGGCACTGACCATCCGTTTGATGTCAGCAAGCCTG
AACAAAAGAATTTACCGCCGATGGTGATGGCATGTGAATTCGCCCCTGAGCTCGAATTACCGACAGTACACATCGATAAC
TTAACCTCTGCATTTGAAGCGGTTAACTACCTAGCCCAATTAGGTCATAAGCGTATCGCTCAAATATCTGGCCCAATATC
AGCGACACTGTGTAAATTCCGCCAACAAGGCTACCAACAAGCATTGCGCCGTGCGGGTGTATCAATGAACCCAGCTTATA
GCACGGTCGGTGACTTTACCTTTGAAGCTGGTGCTCAAGCGGTTCGTCAACTTCTAGCTCTGCCCGAGCAACCTACTGCT
ATTTTCTGTCATAACGATGCAATGGCGATTGGTGCGATTCAAGAAGCGAAGAAGCTAGGTTTACGCGTCCCTCAAGATTT
ATCAATTGTTGGCTTTGATGACATCCAATTCGCTCAATACTGCGATCCACCACTGACAACAATTTCTCAGCCTCGTTACG
AGATTGGACGTCAAGCCATGCTAATGATGCTTGATCTCCTTAAAGGTAACGATGTTCAAGCTGGTTCACGTCTGCTTGAA
GCTAAACTCGTGGTTCGAGGCAGTACTGCACCACCGCGAATTTAA

Domains

Predicted by InterproScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-329)

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	89.759	99.401	0.892
cytR	Vibrio parahaemolyticus RIMD 2210633	87.688	99.701	0.874