Detailed information NTG1054402

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: BCV18_RS01390
• Genome accession: NZ_CP170009
• Coordinates: 312818..314242 (+)
• Length: 474 a.a.
• NCBI ID: WP_010441226.1
• Uniprot ID: A0AAN0LJ83
• Organism: Vibrio cyclitrophicus strain 10N.286.54.F2
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 307818..319242

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BCV18_RS01375 (BCV18_01375)	-	310215..310925 (-)	711	WP_016788744.1	molecular chaperone	-
BCV18_RS01380 (BCV18_01380)	-	310922..311359 (-)	438	WP_016786202.1	DUF4402 domain-containing protein	-
BCV18_RS01385 (BCV18_01385)	-	311413..311847 (-)	435	WP_010441224.1	DUF4402 domain-containing protein	-
BCV18_RS01390 (BCV18_01390)	sbcB	312818..314242 (+)	1425	WP_010441226.1	exodeoxyribonuclease I	Machinery gene
BCV18_RS01395 (BCV18_01395)	-	314268..314639 (+)	372	WP_010441228.1	CidA/LrgA family protein	-
BCV18_RS01400 (BCV18_01400)	-	314642..315319 (+)	678	WP_010441230.1	LrgB family protein	-
BCV18_RS01405 (BCV18_01405)	cdd	315690..316577 (+)	888	WP_010441232.1	cytidine deaminase	-
BCV18_RS01410 (BCV18_01410)	purT	316744..317919 (+)	1176	WP_010441234.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
BCV18_RS01415 (BCV18_01415)	-	318050..318703 (-)	654	WP_010441236.1	thiopurine S-methyltransferase	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54631.96 Da
• Isoelectric Point: 4.9171

>NTDB_id=1054402 BCV18_RS01390 WP_010441226.1 312818..314242(+) (sbcB) [Vibrio cyclitrophicus strain 10N.286.54.F2]
MSSDNQPTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNVIGEPLVIYCQPPADYLPAPEAALITRITPQKAMSQGLPEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRAVHALRPEGIVWPENEEGYP
SFKLEHLSVANGIEHENAHDAMADVIATIELAKKLKAAQPKMFDYLYSMRHKRKLNELVDIVNMTPLMHVSGMFGRDCNY
TSWIVPMAWHPTNQNAVIVVDLAKDPSPLLELDSDALRERLYTKRSELGEDELPVPIKLVQLNKCPILAPAKTLTAENAE
TIGIDRQQCLKNLALLREHPEIREKLIGLYSQEREYEKSDDVDTHLYDGFFSPGDKTAMDIIRQTDPNNLAALDITFGDE
RIKPLLFRYRARHFPWTLDEAEQLKWANHCREFYESRLEEYMLNLENLAHEHESDEKKMAILKAVYQYVEKLAS

Nucleotide

• Length: 1425 bp

>NTDB_id=1054402 BCV18_RS01390 WP_010441226.1 312818..314242(+) (sbcB) [Vibrio cyclitrophicus strain 10N.286.54.F2]
ATGAGTTCAGATAATCAGCCAACCTATTTCTTTTTCGATTACGAAACGTGGGGCGTCAGCCCAGCGAAAGATCGCCCGAG
TCAGTTCGCCGGTGTTCGTACCGACCAAGATTTCAACGTTATCGGAGAGCCATTGGTCATCTATTGCCAACCTCCTGCTG
ATTACTTACCAGCGCCGGAAGCTGCACTCATTACTCGCATTACACCTCAAAAAGCGATGTCTCAAGGCTTACCTGAACCT
GAATTTATCGCGAAGATCCACGCAGAGCTTGCTAAGCCGAACACAACTAGCCTTGGCTACAACAGCATTCGATTCGACGA
CGAAGTAACACGCTATACCTGTTACCGTAATTTCATCGATCCATATGCATGGAGCTGGCAGAACGGCAACTCTCGTTGGG
ATCTACTCGACGTGATGCGCGCGGTACATGCACTTCGCCCTGAAGGTATTGTTTGGCCAGAGAATGAAGAAGGTTACCCA
AGCTTCAAACTGGAACATTTGTCAGTGGCAAATGGCATTGAACACGAAAACGCGCACGATGCGATGGCCGATGTTATTGC
TACCATTGAATTAGCAAAGAAGTTGAAGGCTGCACAGCCTAAAATGTTTGATTACCTTTACAGCATGCGTCACAAACGCA
AATTGAATGAGTTAGTTGACATTGTAAACATGACGCCTTTAATGCACGTTTCAGGCATGTTTGGTCGTGATTGTAATTAC
ACGAGTTGGATTGTGCCGATGGCTTGGCACCCAACCAACCAAAATGCGGTTATCGTAGTCGACTTAGCCAAAGATCCTAG
CCCGCTGCTGGAGCTTGATTCCGACGCCCTCCGTGAAAGGCTCTACACTAAACGCAGTGAACTTGGTGAAGACGAGTTAC
CCGTACCCATCAAATTGGTTCAACTGAACAAGTGCCCTATTCTCGCACCCGCCAAAACTCTGACGGCTGAAAATGCGGAA
ACGATAGGTATCGATCGCCAACAGTGCTTAAAGAACTTAGCGCTATTACGCGAACACCCAGAGATCCGCGAAAAACTGAT
CGGTTTGTATTCACAAGAACGCGAATACGAGAAAAGTGATGACGTAGACACTCATCTGTATGACGGCTTCTTCTCGCCAG
GCGACAAAACCGCAATGGACATCATTCGTCAAACTGACCCAAATAATTTGGCTGCTTTAGACATCACTTTTGGTGACGAA
CGTATTAAACCTTTGTTGTTCCGTTACCGTGCTCGTCATTTCCCGTGGACGTTAGACGAAGCGGAACAACTGAAATGGGC
TAACCACTGTCGAGAGTTTTACGAAAGTCGCTTAGAAGAGTACATGCTGAACCTAGAAAACCTCGCACACGAGCATGAAA
GTGACGAGAAGAAAATGGCTATCTTGAAAGCGGTTTATCAATACGTAGAAAAGCTAGCGAGCTAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

• Exonuclease (RNase_T) (11-191)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	76.533	99.789	0.764