Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   BCV20_RS08130 Genome accession   NZ_CP170007
Coordinates   1837103..1838284 (+) Length   393 a.a.
NCBI ID   WP_016788746.1    Uniprot ID   -
Organism   Vibrio cyclitrophicus strain 10N.286.54.F4     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1832103..1843284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCV20_RS08110 (BCV20_08110) - 1832161..1833186 (+) 1026 WP_016788745.1 CobW family GTP-binding protein -
  BCV20_RS08115 (BCV20_08115) - 1833315..1834247 (-) 933 WP_010441251.1 aspartoacylase -
  BCV20_RS08120 (BCV20_08120) - 1834495..1835391 (-) 897 WP_010441252.1 EamA family transporter -
  BCV20_RS08125 (BCV20_08125) - 1835496..1836893 (+) 1398 WP_010441253.1 PLP-dependent aminotransferase family protein -
  BCV20_RS08130 (BCV20_08130) cqsA 1837103..1838284 (+) 1182 WP_016788746.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  BCV20_RS08135 (BCV20_08135) - 1838406..1840454 (-) 2049 WP_102416655.1 hybrid sensor histidine kinase/response regulator -
  BCV20_RS08140 (BCV20_08140) - 1840810..1841025 (-) 216 WP_016784527.1 hypothetical protein -
  BCV20_RS08145 (BCV20_08145) - 1841344..1842246 (-) 903 WP_016788748.1 Vmh family MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43763.71 Da        Isoelectric Point: 6.1431

>NTDB_id=1054382 BCV20_RS08130 WP_016788746.1 1837103..1838284(+) (cqsA) [Vibrio cyclitrophicus strain 10N.286.54.F4]
MSDKSKNKPLPSFIEERLNFYIQDLITQNESQKHLVLGSHPSHDAVVMQSNDYLSLSHNEQIQKAHRDAISQHDDNVVMS
AIFLQDEQSKPAFETDLANFMGMESCLLSQSGWAANIGLLQTICPPNMPVYIDFFAHMSLWEGIRAAGATGHPFMHNNMN
HLRKQIQRYGSGVIVVDSVYSTIGTVAPLRDIYEMAQEFDCALVVDESHSLGTHGSNGAGLVQALGLTNKVDFITVSLAK
TFAYRAGAILGPKRLSETLPFVAYPAIFSSTVLPQEVIRLEKTLEVIKASDDKRDTLFKRAKALTTGLKRIGFNIRSESQ
IVALECGSESNTERVRDFLEERDVFGAVFCRPATGRNKNIIRFSINADMTPRDIDHVLTACQEAFNHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=1054382 BCV20_RS08130 WP_016788746.1 1837103..1838284(+) (cqsA) [Vibrio cyclitrophicus strain 10N.286.54.F4]
ATGAGTGATAAATCTAAAAACAAACCACTACCTTCCTTTATTGAAGAACGCTTGAACTTCTATATTCAAGATCTCATTAC
ACAAAACGAAAGCCAAAAACATTTGGTATTGGGGAGTCACCCCAGCCATGACGCAGTGGTAATGCAAAGCAACGATTACC
TATCTTTGTCGCACAATGAACAAATCCAGAAAGCACATCGGGACGCAATTTCACAACACGATGACAATGTGGTGATGTCT
GCCATCTTCTTACAAGATGAACAGTCGAAACCTGCATTTGAAACCGATCTGGCTAACTTTATGGGAATGGAAAGCTGCTT
GCTCTCTCAATCAGGTTGGGCGGCTAACATTGGCTTATTGCAAACGATCTGCCCTCCTAATATGCCTGTGTATATCGATT
TTTTTGCACACATGTCCCTATGGGAGGGTATTCGTGCCGCTGGTGCAACTGGCCACCCATTTATGCACAACAACATGAAT
CACCTTCGTAAACAGATTCAGCGTTATGGTTCGGGTGTGATTGTAGTCGACTCGGTTTACAGCACCATAGGTACGGTAGC
CCCACTCCGCGACATCTACGAAATGGCGCAAGAGTTTGACTGTGCCTTGGTCGTCGATGAATCCCATTCACTAGGCACTC
ATGGTTCAAATGGTGCTGGTTTGGTTCAGGCATTAGGGCTGACGAACAAAGTGGATTTCATTACCGTCAGCTTGGCCAAA
ACCTTTGCCTATCGCGCTGGCGCTATACTCGGCCCTAAGCGATTATCGGAGACATTACCCTTTGTCGCTTACCCTGCTAT
TTTTAGCTCGACCGTACTACCACAAGAAGTTATCCGCTTAGAAAAGACTTTAGAGGTTATTAAAGCCTCTGATGATAAGC
GAGACACCTTGTTCAAACGCGCTAAAGCACTGACTACAGGGCTAAAGCGAATCGGTTTTAACATTCGCAGTGAATCTCAG
ATTGTGGCATTAGAATGTGGCAGTGAAAGCAACACTGAGCGTGTACGTGACTTCTTAGAAGAGCGTGACGTGTTTGGTGC
GGTATTTTGTCGGCCAGCAACAGGCAGAAACAAAAACATCATCCGCTTTTCGATTAACGCAGACATGACGCCGCGGGACA
TCGACCATGTTCTCACAGCATGCCAAGAGGCTTTTAATCACCCTGACTTAGAGTTCGTATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

55.556

98.473

0.547

Multiple sequence alignment