Detailed information NTG1054366

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BCV20_RS02120
• Genome accession: NZ_CP170007
• Coordinates: 418985..419965 (+)
• Length: 326 a.a.
• NCBI ID: WP_010435803.1
• Uniprot ID: A0AAN0N9Q1
• Organism: Vibrio cyclitrophicus strain 10N.286.54.F4
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 413985..424965

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BCV20_RS02090 (BCV20_02090)	ispD	414220..414921 (+)	702	WP_010435790.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
BCV20_RS02095 (BCV20_02095)	ispF	414924..415403 (+)	480	WP_010435793.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BCV20_RS02100 (BCV20_02100)	truD	415426..416472 (+)	1047	WP_010435794.1	tRNA pseudouridine(13) synthase TruD	-
BCV20_RS02105 (BCV20_02105)	surE	416548..417291 (+)	744	WP_010435796.1	5'/3'-nucleotidase SurE	-
BCV20_RS02110 (BCV20_02110)	-	417292..417918 (+)	627	WP_010435798.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
BCV20_RS02115 (BCV20_02115)	nlpD	417954..418886 (+)	933	WP_016768192.1	murein hydrolase activator NlpD	-
BCV20_RS02120 (BCV20_02120)	rpoS	418985..419965 (+)	981	WP_010435803.1	RNA polymerase sigma factor RpoS	Regulator
BCV20_RS02125 (BCV20_02125)	mutS	420075..422636 (-)	2562	WP_016768193.1	DNA mismatch repair protein MutS	-
BCV20_RS02130 (BCV20_02130)	pncC	422760..423254 (+)	495	WP_016768194.1	nicotinamide-nucleotide amidase	-
BCV20_RS02135 (BCV20_02135)	recA	423394..424434 (+)	1041	WP_010435812.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 37267.52 Da
• Isoelectric Point: 5.2707

>NTDB_id=1054366 BCV20_RS02120 WP_010435803.1 418985..419965(+) (rpoS) [Vibrio cyclitrophicus strain 10N.286.54.F4]
MSISNAVTKEEFDLNQVTTESETLGKAKRTVTKKTEAKEEAEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIATKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDSDIKNSLIFWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREICLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide

• Length: 981 bp

>NTDB_id=1054366 BCV20_RS02120 WP_010435803.1 418985..419965(+) (rpoS) [Vibrio cyclitrophicus strain 10N.286.54.F4]
ATGAGTATAAGCAATGCAGTAACCAAAGAAGAGTTCGATCTTAACCAAGTAACCACGGAATCGGAAACACTTGGAAAAGC
AAAACGAACAGTCACTAAGAAAACCGAAGCGAAAGAAGAAGCTGAAGTTACGTCTAAAAGTTTAGATGCTACTCAACTCT
ACTTAGGCGAAATTGGTTTCTCACCACTACTAACCGCTGAAGAAGAAGTGCTTTATGCACGTCGAGCTCTACGCGGTGAT
GAAGCGGCCCGCAAACGCATGATTGAAAGTAACCTGCGTTTGGTGGTTAAAATATCTCGTCGTTATAGCAACCGTGGTTT
GGCACTTCTCGATCTAATTGAAGAAGGCAACCTAGGCTTGATTCGCGCCGTAGAGAAGTTTGACCCAGAGCGAGGTTTCC
GCTTTTCAACTTACGCGACATGGTGGATTCGTCAAACCATTGAACGTGCTTTAATGAATCAGACTCGCACCATCCGTTTG
CCAATCCATGTTGTGAAAGAGCTGAACATCTACCTACGTACAGCAAGAGAGTTATCACAAAAGCTTGACCATGAACCAAC
GGCTGAAGAAATTGCTACTAAGCTAGACAAGCCAGTTGGTGATGTGAGCAAGATGCTTCGTTTAAACGAGCGAGTGAGCT
CCGTTGATACGCCAATTGGTGGTGACGGTGAGAAAGCACTGTTGGATATTATTCCGGACATCAACAATTCCGATCCTGAG
GTTTCAACTCAAGATAGCGATATCAAGAACTCGTTGATTTTCTGGCTAGATGAGCTGAACCCGAAACAGAAAGAGGTGCT
TGCACGTCGCTTTGGACTACTTGGCTATGAACCGTCAACGTTAGAAGAAGTAGGCCGTGAAATCTGCCTGACTCGTGAAC
GTGTTCGTCAAATCCAAGTTGAAGGTCTTCGCCGTCTACGAGAGATTCTGATCAAGCAAGGTCTGAACATGGAAAACCTG
TTTAACGTTGAAAACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (49-82)

• Sigma-70 region 2 (Sigma70_r2) (87-156)

• Sigma-70, region 4 (Sigma70_r4) (255-308)

• Sigma-70 region 3 (Sigma70_r3) (167-240)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.437	100	0.834