Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   BCV20_RS00890 Genome accession   NZ_CP170007
Coordinates   199057..200082 (+) Length   341 a.a.
NCBI ID   WP_016787692.1    Uniprot ID   A0AAN0LM26
Organism   Vibrio cyclitrophicus strain 10N.286.54.F4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 194057..205082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCV20_RS00875 (BCV20_00875) - 194408..195136 (-) 729 WP_010435300.1 glutathione peroxidase -
  BCV20_RS00880 (BCV20_00880) oxyR 195358..196251 (+) 894 WP_010435297.1 DNA-binding transcriptional regulator OxyR -
  BCV20_RS00885 (BCV20_00885) - 196347..198905 (-) 2559 WP_198591911.1 penicillin-binding protein 1A -
  BCV20_RS00890 (BCV20_00890) pilM 199057..200082 (+) 1026 WP_016787692.1 type IV pilus assembly protein PilM Machinery gene
  BCV20_RS00895 (BCV20_00895) pilN 200066..200680 (+) 615 WP_010435288.1 PilN domain-containing protein Machinery gene
  BCV20_RS00900 (BCV20_00900) pilO 200673..201302 (+) 630 WP_010435284.1 type 4a pilus biogenesis protein PilO Machinery gene
  BCV20_RS00905 (BCV20_00905) pilP 201289..201807 (+) 519 WP_016787693.1 pilus assembly protein PilP Machinery gene
  BCV20_RS00910 (BCV20_00910) pilQ 201867..203558 (+) 1692 WP_016787694.1 type IV pilus secretin PilQ Machinery gene
  BCV20_RS00915 (BCV20_00915) aroK 203735..204253 (+) 519 WP_009848907.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 38128.77 Da        Isoelectric Point: 6.8348

>NTDB_id=1054357 BCV20_RS00890 WP_016787692.1 199057..200082(+) (pilM) [Vibrio cyclitrophicus strain 10N.286.54.F4]
MGSSLITGIDINHHSIKAVVLKPVGESYALVGYKELPISDDIFTANHTLEYQKTVKKLKELRKGLPFGSRNVAISVPDNT
VISKVLQIESELEDREKEFSIYQTFAHQSPFPIEELSLDFVKLEDKRFGKGSTSSYQVYATRKEVVDSRADALTKAGFKP
IVVDTQAHGLLNIWQLASHLYPEKKNWLLVDVGVDQTSLGIIPQGSAPFYKDIAFGIQDLCSTGNSMDMEGGFSNVEEKH
KFIVNLIEKLKRQLQLYSSVNALQPISGIWLMGEGASMPMVVEELERHFQLSCESLNPLSLFENKVAKKRRLPMDWQHFG
IAAGMAMSGLKWQGEKHVASN

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=1054357 BCV20_RS00890 WP_016787692.1 199057..200082(+) (pilM) [Vibrio cyclitrophicus strain 10N.286.54.F4]
ATGGGTTCATCATTAATTACAGGTATAGATATAAATCACCACAGCATCAAAGCCGTGGTACTAAAACCCGTTGGGGAGTC
GTATGCCCTGGTGGGATACAAAGAGCTGCCGATTTCGGACGACATTTTTACAGCTAACCATACTTTGGAGTATCAGAAAA
CTGTTAAGAAACTCAAAGAACTTAGGAAAGGGCTGCCTTTTGGAAGCCGCAACGTCGCTATTTCGGTACCGGATAACACG
GTGATCAGCAAAGTACTGCAAATAGAGAGCGAATTAGAAGATAGAGAAAAGGAGTTCTCGATCTATCAAACCTTTGCTCA
TCAATCTCCCTTTCCTATCGAGGAGCTGAGTTTAGATTTTGTAAAGCTAGAAGACAAACGATTTGGTAAAGGATCAACAA
GCAGCTATCAAGTGTATGCGACTCGTAAAGAGGTGGTTGATAGCCGAGCTGACGCGCTAACGAAAGCAGGGTTTAAGCCC
ATCGTTGTCGACACTCAGGCCCATGGTTTACTCAACATTTGGCAATTGGCTTCGCATTTGTATCCAGAAAAAAAGAATTG
GCTGTTGGTGGATGTTGGCGTTGATCAAACTTCATTAGGCATTATTCCCCAAGGTTCAGCGCCATTTTATAAAGATATTG
CCTTTGGCATTCAAGATCTTTGCAGTACGGGTAACTCGATGGATATGGAGGGTGGGTTTAGTAACGTTGAGGAGAAGCAT
AAGTTTATTGTCAATTTGATTGAAAAACTCAAGCGTCAGTTACAGCTCTATTCATCGGTCAATGCGCTTCAACCTATCTC
AGGAATTTGGCTAATGGGCGAAGGAGCAAGTATGCCGATGGTCGTTGAAGAGTTAGAGCGACATTTTCAGTTAAGTTGTG
AGTCTTTGAACCCCCTATCTTTGTTTGAGAATAAGGTCGCGAAAAAACGTCGATTACCCATGGATTGGCAACATTTTGGT
ATTGCAGCAGGCATGGCGATGAGTGGACTCAAGTGGCAGGGAGAAAAGCATGTTGCATCAAATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(8-220)

Type IV pilus assembly protein PilM; (PilM_2)

(242-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Vibrio cholerae strain A1552

53.392

99.413

0.531
  pilM Vibrio campbellii strain DS40M4

47.661

100

0.478

Multiple sequence alignment