Detailed information NTG1054320

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BCV24_RS02090
• Genome accession: NZ_CP170005
• Coordinates: 411721..412701 (+)
• Length: 326 a.a.
• NCBI ID: WP_010435803.1
• Uniprot ID: A0AAN0N9Q1
• Organism: Vibrio cyclitrophicus strain 10N.286.54.F9
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 406721..417701

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BCV24_RS02060 (BCV24_02060)	ispD	406956..407657 (+)	702	WP_010435790.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
BCV24_RS02065 (BCV24_02065)	ispF	407660..408139 (+)	480	WP_010435793.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BCV24_RS02070 (BCV24_02070)	truD	408162..409208 (+)	1047	WP_010435794.1	tRNA pseudouridine(13) synthase TruD	-
BCV24_RS02075 (BCV24_02075)	surE	409284..410027 (+)	744	WP_010435796.1	5'/3'-nucleotidase SurE	-
BCV24_RS02080 (BCV24_02080)	-	410028..410654 (+)	627	WP_010435798.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
BCV24_RS02085 (BCV24_02085)	nlpD	410690..411622 (+)	933	WP_016768192.1	murein hydrolase activator NlpD	-
BCV24_RS02090 (BCV24_02090)	rpoS	411721..412701 (+)	981	WP_010435803.1	RNA polymerase sigma factor RpoS	Regulator
BCV24_RS02095 (BCV24_02095)	mutS	412811..415372 (-)	2562	WP_016768193.1	DNA mismatch repair protein MutS	-
BCV24_RS02100 (BCV24_02100)	pncC	415496..415990 (+)	495	WP_016768194.1	nicotinamide-nucleotide amidase	-
BCV24_RS02105 (BCV24_02105)	recA	416130..417170 (+)	1041	WP_010435812.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 37267.52 Da
• Isoelectric Point: 5.2707

>NTDB_id=1054320 BCV24_RS02090 WP_010435803.1 411721..412701(+) (rpoS) [Vibrio cyclitrophicus strain 10N.286.54.F9]
MSISNAVTKEEFDLNQVTTESETLGKAKRTVTKKTEAKEEAEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIATKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDSDIKNSLIFWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREICLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide

• Length: 981 bp

>NTDB_id=1054320 BCV24_RS02090 WP_010435803.1 411721..412701(+) (rpoS) [Vibrio cyclitrophicus strain 10N.286.54.F9]
ATGAGTATAAGCAATGCAGTAACCAAAGAAGAGTTCGATCTTAACCAAGTAACCACGGAATCGGAAACACTTGGAAAAGC
AAAACGAACAGTCACTAAGAAAACCGAAGCGAAAGAAGAAGCTGAAGTTACGTCTAAAAGTTTAGATGCTACTCAACTCT
ACTTAGGCGAAATTGGTTTCTCACCACTACTAACCGCTGAAGAAGAAGTGCTTTATGCACGTCGAGCTCTACGCGGTGAT
GAAGCGGCCCGCAAACGCATGATTGAAAGTAACCTGCGTTTGGTGGTTAAAATATCTCGTCGTTATAGCAACCGTGGTTT
GGCACTTCTCGATCTAATTGAAGAAGGCAACCTAGGCTTGATTCGCGCCGTAGAGAAGTTTGACCCAGAGCGAGGTTTCC
GCTTTTCAACTTACGCGACATGGTGGATTCGTCAAACCATTGAACGTGCTTTAATGAATCAGACTCGCACCATCCGTTTG
CCAATCCATGTTGTGAAAGAGCTGAACATCTACCTACGTACAGCAAGAGAGTTATCACAAAAGCTTGACCATGAACCAAC
GGCTGAAGAAATTGCTACTAAGCTAGACAAGCCAGTTGGTGATGTGAGCAAGATGCTTCGTTTAAACGAGCGAGTGAGCT
CCGTTGATACGCCAATTGGTGGTGACGGTGAGAAAGCACTGTTGGATATTATTCCGGACATCAACAATTCCGATCCTGAG
GTTTCAACTCAAGATAGCGATATCAAGAACTCGTTGATTTTCTGGCTAGATGAGCTGAACCCGAAACAGAAAGAGGTGCT
TGCACGTCGCTTTGGACTACTTGGCTATGAACCGTCAACGTTAGAAGAAGTAGGCCGTGAAATCTGCCTGACTCGTGAAC
GTGTTCGTCAAATCCAAGTTGAAGGTCTTCGCCGTCTACGAGAGATTCTGATCAAGCAAGGTCTGAATATGGAAAACCTG
TTTAACGTTGAAAACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (49-82)

• Sigma-70 region 2 (Sigma70_r2) (87-156)

• Sigma-70, region 4 (Sigma70_r4) (255-308)

• Sigma-70 region 3 (Sigma70_r3) (167-240)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.437	100	0.834