Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | BCV24_RS00895 | Genome accession | NZ_CP170005 |
| Coordinates | 200001..200615 (+) | Length | 204 a.a. |
| NCBI ID | WP_016767987.1 | Uniprot ID | A0A7Z1MKE0 |
| Organism | Vibrio cyclitrophicus strain 10N.286.54.F9 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 195001..205615
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BCV24_RS00880 (BCV24_00880) | oxyR | 195291..196184 (+) | 894 | WP_010435297.1 | DNA-binding transcriptional regulator OxyR | - |
| BCV24_RS00885 (BCV24_00885) | - | 196280..198839 (-) | 2560 | Protein_148 | penicillin-binding protein 1A | - |
| BCV24_RS00890 (BCV24_00890) | pilM | 198991..200017 (+) | 1027 | Protein_149 | type IV pilus assembly protein PilM | - |
| BCV24_RS00895 (BCV24_00895) | pilN | 200001..200615 (+) | 615 | WP_016767987.1 | PilN domain-containing protein | Machinery gene |
| BCV24_RS00900 (BCV24_00900) | pilO | 200608..201237 (+) | 630 | WP_010435284.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| BCV24_RS00905 (BCV24_00905) | pilP | 201224..201742 (+) | 519 | WP_016767989.1 | pilus assembly protein PilP | Machinery gene |
| BCV24_RS00910 (BCV24_00910) | pilQ | 201802..203493 (+) | 1692 | WP_016787694.1 | type IV pilus secretin PilQ | Machinery gene |
| BCV24_RS00915 (BCV24_00915) | aroK | 203670..204188 (+) | 519 | WP_009848907.1 | shikimate kinase AroK | - |
| BCV24_RS00920 (BCV24_00920) | aroB | 204213..205301 (+) | 1089 | WP_010435273.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 204 a.a. Molecular weight: 23331.79 Da Isoelectric Point: 9.3072
>NTDB_id=1054312 BCV24_RS00895 WP_016767987.1 200001..200615(+) (pilN) [Vibrio cyclitrophicus strain 10N.286.54.F9]
MLHQINLLSWRDEIRAQHKKRFIHLVILGVIIALAGQWAVGHYFHDQQAKQQARLSYLDKYIGVLDRQIQSLKVAEQEHK
AILTRLAVVESLQFGRNKTTDFMNLMPELIPEGVYVDKIKMNGQEIEMSGISDSTARLATMLDNLERSDSLKEVEMHSIV
HNRKRFNKEFQSFKVSFVFSPVSLENTTAEGTTANIKEKGANHG
MLHQINLLSWRDEIRAQHKKRFIHLVILGVIIALAGQWAVGHYFHDQQAKQQARLSYLDKYIGVLDRQIQSLKVAEQEHK
AILTRLAVVESLQFGRNKTTDFMNLMPELIPEGVYVDKIKMNGQEIEMSGISDSTARLATMLDNLERSDSLKEVEMHSIV
HNRKRFNKEFQSFKVSFVFSPVSLENTTAEGTTANIKEKGANHG
Nucleotide
Download Length: 615 bp
>NTDB_id=1054312 BCV24_RS00895 WP_016767987.1 200001..200615(+) (pilN) [Vibrio cyclitrophicus strain 10N.286.54.F9]
ATGTTGCATCAAATTAACCTGTTGTCGTGGCGTGATGAGATTCGCGCTCAGCATAAAAAGCGTTTCATTCATCTGGTCAT
TCTTGGCGTCATCATTGCGCTTGCCGGGCAATGGGCGGTGGGACACTATTTTCATGACCAACAAGCCAAGCAGCAAGCGC
GCCTCAGTTATCTCGATAAGTACATCGGAGTGCTCGACCGACAAATCCAGTCATTAAAAGTCGCAGAGCAAGAGCACAAA
GCCATCCTTACACGACTTGCTGTCGTGGAGTCTTTACAGTTCGGGCGCAATAAAACCACCGACTTTATGAACCTGATGCC
GGAGCTGATTCCTGAGGGCGTGTATGTCGACAAGATAAAGATGAATGGTCAGGAGATTGAAATGTCGGGCATCAGCGACA
GCACCGCTCGTCTAGCCACCATGTTGGACAACCTAGAACGTTCTGACTCTCTTAAAGAAGTTGAGATGCACTCTATTGTT
CATAACCGTAAGCGCTTCAATAAAGAGTTTCAGAGCTTCAAGGTCTCTTTTGTGTTTAGCCCTGTTTCTTTAGAAAACAC
AACCGCAGAGGGCACAACTGCGAACATAAAAGAGAAGGGGGCGAATCATGGCTAA
ATGTTGCATCAAATTAACCTGTTGTCGTGGCGTGATGAGATTCGCGCTCAGCATAAAAAGCGTTTCATTCATCTGGTCAT
TCTTGGCGTCATCATTGCGCTTGCCGGGCAATGGGCGGTGGGACACTATTTTCATGACCAACAAGCCAAGCAGCAAGCGC
GCCTCAGTTATCTCGATAAGTACATCGGAGTGCTCGACCGACAAATCCAGTCATTAAAAGTCGCAGAGCAAGAGCACAAA
GCCATCCTTACACGACTTGCTGTCGTGGAGTCTTTACAGTTCGGGCGCAATAAAACCACCGACTTTATGAACCTGATGCC
GGAGCTGATTCCTGAGGGCGTGTATGTCGACAAGATAAAGATGAATGGTCAGGAGATTGAAATGTCGGGCATCAGCGACA
GCACCGCTCGTCTAGCCACCATGTTGGACAACCTAGAACGTTCTGACTCTCTTAAAGAAGTTGAGATGCACTCTATTGTT
CATAACCGTAAGCGCTTCAATAAAGAGTTTCAGAGCTTCAAGGTCTCTTTTGTGTTTAGCCCTGTTTCTTTAGAAAACAC
AACCGCAGAGGGCACAACTGCGAACATAAAAGAGAAGGGGGCGAATCATGGCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio cholerae strain A1552 |
63.731 |
94.608 |
0.603 |
| pilN | Vibrio campbellii strain DS40M4 |
61.78 |
93.627 |
0.578 |