Detailed information NTG1054282

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BCV29_RS07660
• Genome accession: NZ_CP170001
• Coordinates: 1765205..1766185 (-)
• Length: 326 a.a.
• NCBI ID: WP_010435803.1
• Uniprot ID: A0AAN0N9Q1
• Organism: Vibrio cyclitrophicus strain 10N.286.55.B4
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1760205..1771185

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BCV29_RS07645 (BCV29_07645)	recA	1760736..1761776 (-)	1041	WP_010435812.1	recombinase RecA	Machinery gene
BCV29_RS07650 (BCV29_07650)	pncC	1761916..1762410 (-)	495	WP_016768194.1	nicotinamide-nucleotide amidase	-
BCV29_RS07655 (BCV29_07655)	mutS	1762534..1765095 (+)	2562	WP_016768193.1	DNA mismatch repair protein MutS	-
BCV29_RS07660 (BCV29_07660)	rpoS	1765205..1766185 (-)	981	WP_010435803.1	RNA polymerase sigma factor RpoS	Regulator
BCV29_RS07665 (BCV29_07665)	nlpD	1766284..1767216 (-)	933	WP_016768192.1	murein hydrolase activator NlpD	-
BCV29_RS07670 (BCV29_07670)	-	1767252..1767878 (-)	627	WP_010435798.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
BCV29_RS07675 (BCV29_07675)	surE	1767879..1768622 (-)	744	WP_010435796.1	5'/3'-nucleotidase SurE	-
BCV29_RS07680 (BCV29_07680)	truD	1768698..1769744 (-)	1047	WP_010435794.1	tRNA pseudouridine(13) synthase TruD	-
BCV29_RS07685 (BCV29_07685)	ispF	1769767..1770246 (-)	480	WP_010435793.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BCV29_RS07690 (BCV29_07690)	ispD	1770249..1770950 (-)	702	WP_010435790.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 37267.52 Da
• Isoelectric Point: 5.2707

>NTDB_id=1054282 BCV29_RS07660 WP_010435803.1 1765205..1766185(-) (rpoS) [Vibrio cyclitrophicus strain 10N.286.55.B4]
MSISNAVTKEEFDLNQVTTESETLGKAKRTVTKKTEAKEEAEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIATKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDSDIKNSLIFWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREICLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide

• Length: 981 bp

>NTDB_id=1054282 BCV29_RS07660 WP_010435803.1 1765205..1766185(-) (rpoS) [Vibrio cyclitrophicus strain 10N.286.55.B4]
ATGAGTATAAGCAATGCAGTAACCAAAGAAGAGTTCGATCTTAACCAAGTAACCACGGAATCGGAAACACTTGGAAAAGC
AAAACGAACAGTCACTAAGAAAACCGAAGCGAAAGAAGAAGCTGAAGTTACGTCTAAAAGTTTAGATGCTACTCAACTCT
ACTTAGGCGAAATTGGTTTCTCACCACTACTAACCGCTGAAGAAGAAGTGCTTTATGCACGTCGAGCTCTACGCGGTGAT
GAAGCGGCCCGCAAACGCATGATTGAAAGTAACCTGCGTTTGGTGGTTAAAATATCTCGTCGTTATAGCAACCGTGGTTT
GGCACTTCTCGATCTAATTGAAGAAGGCAACCTAGGCTTGATTCGCGCCGTAGAGAAGTTTGACCCAGAGCGAGGTTTCC
GCTTTTCAACTTACGCGACATGGTGGATTCGTCAAACCATTGAACGTGCTTTAATGAATCAGACTCGCACCATCCGTTTG
CCAATCCATGTTGTGAAAGAGCTGAACATCTACCTACGTACAGCAAGAGAGTTATCACAAAAGCTTGACCATGAACCAAC
GGCTGAAGAAATTGCTACTAAGCTAGACAAGCCAGTTGGTGATGTGAGCAAGATGCTTCGTTTAAACGAGCGAGTGAGCT
CCGTTGATACGCCAATTGGTGGTGACGGTGAGAAAGCACTGTTGGATATTATTCCGGACATCAACAATTCCGATCCTGAG
GTTTCAACTCAAGATAGCGATATCAAGAACTCGTTGATTTTCTGGCTAGATGAGCTGAACCCGAAACAGAAAGAGGTGCT
TGCACGTCGCTTTGGACTACTTGGCTATGAACCGTCAACGTTAGAAGAAGTAGGCCGTGAAATCTGCCTGACTCGTGAAC
GTGTTCGTCAAATCCAAGTTGAAGGTCTTCGCCGTCTACGAGAGATTCTGATCAAGCAAGGTCTGAACATGGAAAACCTG
TTTAACGTTGAAAACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (49-82)

• Sigma-70 region 2 (Sigma70_r2) (87-156)

• Sigma-70, region 4 (Sigma70_r4) (255-308)

• Sigma-70 region 3 (Sigma70_r3) (167-240)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.437	100	0.834