Detailed information NTG1054268

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: BCV29_RS01845
• Genome accession: NZ_CP170001
• Coordinates: 398155..399579 (-)
• Length: 474 a.a.
• NCBI ID: WP_010441226.1
• Uniprot ID: A0AAN0LJ83
• Organism: Vibrio cyclitrophicus strain 10N.286.55.B4
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 393155..404579

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BCV29_RS01820 (BCV29_01820)	-	393693..394346 (+)	654	WP_010441236.1	thiopurine S-methyltransferase	-
BCV29_RS01825 (BCV29_01825)	purT	394478..395653 (-)	1176	WP_010441234.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
BCV29_RS01830 (BCV29_01830)	cdd	395820..396707 (-)	888	WP_010441232.1	cytidine deaminase	-
BCV29_RS01835 (BCV29_01835)	-	397078..397755 (-)	678	WP_010441230.1	LrgB family protein	-
BCV29_RS01840 (BCV29_01840)	-	397758..398129 (-)	372	WP_102313192.1	CidA/LrgA family protein	-
BCV29_RS01845 (BCV29_01845)	sbcB	398155..399579 (-)	1425	WP_010441226.1	exodeoxyribonuclease I	Machinery gene
BCV29_RS01850 (BCV29_01850)	-	400550..400984 (+)	435	WP_016795767.1	DUF4402 domain-containing protein	-
BCV29_RS01855 (BCV29_01855)	-	401038..401475 (+)	438	WP_016786202.1	DUF4402 domain-containing protein	-
BCV29_RS01860 (BCV29_01860)	-	401472..402182 (+)	711	WP_016792395.1	molecular chaperone	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54631.96 Da
• Isoelectric Point: 4.9171

>NTDB_id=1054268 BCV29_RS01845 WP_010441226.1 398155..399579(-) (sbcB) [Vibrio cyclitrophicus strain 10N.286.55.B4]
MSSDNQPTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNVIGEPLVIYCQPPADYLPAPEAALITRITPQKAMSQGLPEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRAVHALRPEGIVWPENEEGYP
SFKLEHLSVANGIEHENAHDAMADVIATIELAKKLKAAQPKMFDYLYSMRHKRKLNELVDIVNMTPLMHVSGMFGRDCNY
TSWIVPMAWHPTNQNAVIVVDLAKDPSPLLELDSDALRERLYTKRSELGEDELPVPIKLVQLNKCPILAPAKTLTAENAE
TIGIDRQQCLKNLALLREHPEIREKLIGLYSQEREYEKSDDVDTHLYDGFFSPGDKTAMDIIRQTDPNNLAALDITFGDE
RIKPLLFRYRARHFPWTLDEAEQLKWANHCREFYESRLEEYMLNLENLAHEHESDEKKMAILKAVYQYVEKLAS

Nucleotide

• Length: 1425 bp

>NTDB_id=1054268 BCV29_RS01845 WP_010441226.1 398155..399579(-) (sbcB) [Vibrio cyclitrophicus strain 10N.286.55.B4]
ATGAGTTCAGATAATCAGCCAACCTATTTCTTTTTCGATTACGAAACGTGGGGCGTCAGCCCAGCGAAAGATCGCCCGAG
TCAGTTCGCCGGTGTTCGTACCGACCAAGATTTCAACGTTATCGGAGAGCCATTGGTCATCTATTGCCAACCTCCTGCTG
ATTACTTACCAGCGCCGGAAGCTGCACTCATTACTCGCATCACACCTCAAAAAGCGATGTCTCAAGGCTTACCTGAACCT
GAATTTATCGCGAAAATCCACGCAGAGCTTGCTAAGCCGAACACAACTAGCCTTGGCTACAACAGCATTCGATTCGACGA
CGAAGTAACACGCTATACCTGTTACCGTAATTTCATCGATCCATATGCATGGAGCTGGCAGAACGGCAACTCTCGTTGGG
ATCTACTCGACGTGATGCGCGCGGTACATGCACTTCGCCCTGAAGGTATTGTTTGGCCAGAGAATGAAGAAGGTTACCCA
AGCTTCAAACTGGAACATTTGTCAGTGGCAAATGGCATTGAACACGAAAACGCGCACGATGCGATGGCCGATGTTATTGC
TACCATTGAATTAGCAAAGAAGTTGAAGGCTGCACAGCCTAAAATGTTTGATTACCTTTACAGCATGCGTCACAAACGCA
AATTGAATGAGTTAGTTGACATTGTAAACATGACGCCTTTAATGCACGTTTCAGGCATGTTTGGTCGTGATTGTAATTAC
ACGAGTTGGATTGTGCCGATGGCTTGGCACCCAACCAACCAAAATGCGGTTATCGTAGTCGACTTAGCCAAAGATCCTAG
CCCGCTGCTGGAGCTTGATTCTGACGCCCTCCGTGAAAGGCTCTACACTAAACGCAGTGAACTTGGTGAAGACGAGTTAC
CCGTACCCATCAAATTGGTTCAACTGAACAAGTGCCCTATTCTCGCACCCGCCAAAACTCTGACGGCTGAAAATGCGGAA
ACGATAGGTATCGATCGCCAACAGTGCTTAAAGAACTTAGCGCTATTACGCGAACACCCAGAGATCCGCGAAAAACTGAT
CGGTTTGTATTCACAAGAACGCGAATACGAGAAAAGTGATGACGTAGACACTCATCTGTATGACGGCTTCTTCTCGCCAG
GCGACAAAACCGCAATGGACATCATTCGTCAAACTGACCCAAATAACTTGGCTGCTTTAGACATCACTTTTGGTGACGAA
CGTATTAAACCTTTGTTGTTCCGTTACCGTGCTCGTCATTTCCCGTGGACGTTAGACGAAGCGGAACAACTGAAATGGGC
TAACCACTGTCGAGAGTTTTACGAAAGTCGCTTAGAAGAGTACATGCTGAACCTAGAAAACCTCGCACACGAGCATGAAA
GTGACGAGAAGAAAATGGCTATCTTGAAAGCGGTTTATCAATACGTAGAAAAGCTAGCGAGCTAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

• Exonuclease (RNase_T) (11-191)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	76.533	99.789	0.764