Detailed information NTG1054237

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BCV31_RS06475
• Genome accession: NZ_CP169999
• Coordinates: 1518955..1519935 (-)
• Length: 326 a.a.
• NCBI ID: WP_010435803.1
• Uniprot ID: A0AAN0N9Q1
• Organism: Vibrio cyclitrophicus strain 10N.286.55.C10
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1513955..1524935

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BCV31_RS06460 (BCV31_06460)	recA	1514486..1515526 (-)	1041	WP_010435812.1	recombinase RecA	Machinery gene
BCV31_RS06465 (BCV31_06465)	pncC	1515666..1516160 (-)	495	WP_016768194.1	nicotinamide-nucleotide amidase	-
BCV31_RS06470 (BCV31_06470)	mutS	1516284..1518845 (+)	2562	WP_016768193.1	DNA mismatch repair protein MutS	-
BCV31_RS06475 (BCV31_06475)	rpoS	1518955..1519935 (-)	981	WP_010435803.1	RNA polymerase sigma factor RpoS	Regulator
BCV31_RS06480 (BCV31_06480)	nlpD	1520034..1520966 (-)	933	WP_016768192.1	murein hydrolase activator NlpD	-
BCV31_RS06485 (BCV31_06485)	-	1521002..1521628 (-)	627	WP_010435798.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
BCV31_RS06490 (BCV31_06490)	surE	1521629..1522372 (-)	744	WP_010435796.1	5'/3'-nucleotidase SurE	-
BCV31_RS06495 (BCV31_06495)	truD	1522448..1523494 (-)	1047	WP_065101140.1	tRNA pseudouridine(13) synthase TruD	-
BCV31_RS06500 (BCV31_06500)	ispF	1523517..1523996 (-)	480	WP_016783764.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BCV31_RS06505 (BCV31_06505)	ispD	1523999..1524700 (-)	702	WP_010435790.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 37267.52 Da
• Isoelectric Point: 5.2707

>NTDB_id=1054237 BCV31_RS06475 WP_010435803.1 1518955..1519935(-) (rpoS) [Vibrio cyclitrophicus strain 10N.286.55.C10]
MSISNAVTKEEFDLNQVTTESETLGKAKRTVTKKTEAKEEAEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIATKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDSDIKNSLIFWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREICLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide

• Length: 981 bp

>NTDB_id=1054237 BCV31_RS06475 WP_010435803.1 1518955..1519935(-) (rpoS) [Vibrio cyclitrophicus strain 10N.286.55.C10]
ATGAGTATAAGCAATGCAGTAACCAAAGAAGAGTTCGATCTTAACCAAGTAACCACGGAATCGGAAACACTTGGAAAAGC
AAAACGAACAGTCACTAAGAAAACCGAAGCGAAAGAAGAAGCTGAAGTTACGTCTAAAAGTTTAGATGCTACTCAACTCT
ACTTAGGCGAAATTGGTTTCTCACCACTACTAACCGCTGAAGAAGAAGTGCTTTATGCACGTCGAGCTCTACGCGGTGAT
GAAGCGGCCCGCAAACGCATGATTGAAAGTAACCTGCGTTTGGTGGTTAAAATATCTCGTCGTTATAGCAACCGTGGTTT
GGCACTTCTCGATCTAATTGAAGAAGGCAACCTAGGCTTGATTCGCGCCGTAGAGAAGTTTGACCCAGAGCGAGGTTTCC
GCTTTTCAACTTACGCGACATGGTGGATTCGTCAAACCATTGAACGTGCTTTAATGAATCAGACTCGCACCATCCGTTTG
CCAATCCATGTTGTGAAAGAGCTGAACATCTACCTACGTACAGCAAGAGAGTTATCACAAAAGCTTGACCATGAACCAAC
GGCTGAAGAAATTGCTACTAAGCTAGACAAGCCAGTTGGTGATGTGAGCAAGATGCTTCGTTTAAACGAGCGAGTGAGCT
CCGTTGATACGCCAATTGGTGGTGACGGTGAGAAAGCACTGTTGGATATTATTCCGGACATCAACAATTCCGATCCTGAG
GTTTCAACTCAAGATAGCGATATCAAGAACTCGTTGATTTTCTGGCTAGATGAGCTGAACCCGAAACAGAAAGAGGTGCT
TGCACGTCGCTTTGGACTACTTGGCTATGAACCGTCAACGTTAGAAGAAGTAGGCCGTGAAATCTGCCTGACTCGTGAAC
GTGTTCGTCAAATCCAAGTTGAAGGTCTTCGCCGTCTACGAGAGATTCTGATCAAGCAAGGTCTGAACATGGAAAACCTG
TTTAACGTTGAAAACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (49-82)

• Sigma-70 region 2 (Sigma70_r2) (87-156)

• Sigma-70, region 4 (Sigma70_r4) (255-308)

• Sigma-70 region 3 (Sigma70_r3) (167-240)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.437	100	0.834