Detailed information NTG1054223

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: BCV31_RS00765
• Genome accession: NZ_CP169999
• Coordinates: 177579..179003 (-)
• Length: 474 a.a.
• NCBI ID: WP_010441226.1
• Uniprot ID: A0AAN0LJ83
• Organism: Vibrio cyclitrophicus strain 10N.286.55.C10
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 172579..184003

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BCV31_RS00740 (BCV31_00740)	-	173118..173771 (+)	654	WP_010441236.1	thiopurine S-methyltransferase	-
BCV31_RS00745 (BCV31_00745)	purT	173902..175077 (-)	1176	WP_010441234.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
BCV31_RS00750 (BCV31_00750)	cdd	175244..176131 (-)	888	WP_010441232.1	cytidine deaminase	-
BCV31_RS00755 (BCV31_00755)	-	176502..177179 (-)	678	WP_010441230.1	LrgB family protein	-
BCV31_RS00760 (BCV31_00760)	-	177182..177553 (-)	372	WP_010441228.1	CidA/LrgA family protein	-
BCV31_RS00765 (BCV31_00765)	sbcB	177579..179003 (-)	1425	WP_010441226.1	exodeoxyribonuclease I	Machinery gene
BCV31_RS00770 (BCV31_00770)	-	179974..180408 (+)	435	WP_010441224.1	DUF4402 domain-containing protein	-
BCV31_RS00775 (BCV31_00775)	-	180462..180899 (+)	438	WP_016786202.1	DUF4402 domain-containing protein	-
BCV31_RS00780 (BCV31_00780)	-	180896..181606 (+)	711	WP_010441221.1	molecular chaperone	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54631.96 Da
• Isoelectric Point: 4.9171

>NTDB_id=1054223 BCV31_RS00765 WP_010441226.1 177579..179003(-) (sbcB) [Vibrio cyclitrophicus strain 10N.286.55.C10]
MSSDNQPTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNVIGEPLVIYCQPPADYLPAPEAALITRITPQKAMSQGLPEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRAVHALRPEGIVWPENEEGYP
SFKLEHLSVANGIEHENAHDAMADVIATIELAKKLKAAQPKMFDYLYSMRHKRKLNELVDIVNMTPLMHVSGMFGRDCNY
TSWIVPMAWHPTNQNAVIVVDLAKDPSPLLELDSDALRERLYTKRSELGEDELPVPIKLVQLNKCPILAPAKTLTAENAE
TIGIDRQQCLKNLALLREHPEIREKLIGLYSQEREYEKSDDVDTHLYDGFFSPGDKTAMDIIRQTDPNNLAALDITFGDE
RIKPLLFRYRARHFPWTLDEAEQLKWANHCREFYESRLEEYMLNLENLAHEHESDEKKMAILKAVYQYVEKLAS

Nucleotide

• Length: 1425 bp

>NTDB_id=1054223 BCV31_RS00765 WP_010441226.1 177579..179003(-) (sbcB) [Vibrio cyclitrophicus strain 10N.286.55.C10]
ATGAGTTCAGATAATCAGCCAACCTATTTCTTTTTCGATTACGAAACGTGGGGCGTCAGCCCAGCGAAAGATCGCCCGAG
TCAGTTCGCCGGTGTTCGTACCGACCAAGATTTCAACGTTATCGGAGAGCCATTGGTCATCTATTGCCAACCTCCTGCTG
ATTACTTACCAGCGCCGGAAGCTGCACTCATTACTCGCATTACACCTCAAAAAGCGATGTCTCAAGGCTTACCTGAACCT
GAATTTATCGCGAAGATCCACGCAGAGCTTGCTAAGCCGAACACAACTAGCCTTGGCTACAACAGCATTCGATTCGACGA
CGAAGTAACACGCTATACCTGTTACCGTAATTTCATCGATCCATATGCATGGAGCTGGCAGAACGGCAACTCTCGTTGGG
ATCTACTCGACGTGATGCGCGCGGTACATGCACTTCGCCCTGAAGGTATTGTTTGGCCAGAGAATGAAGAAGGTTACCCA
AGCTTCAAACTGGAACATTTGTCAGTGGCAAATGGCATTGAACACGAAAACGCGCACGATGCGATGGCCGATGTTATTGC
TACCATTGAATTAGCAAAGAAGTTGAAGGCTGCACAGCCTAAAATGTTTGATTACCTTTACAGCATGCGTCACAAACGCA
AATTGAATGAGTTAGTTGACATTGTAAACATGACGCCTTTAATGCACGTTTCAGGCATGTTTGGTCGTGATTGTAATTAC
ACGAGTTGGATTGTGCCGATGGCTTGGCACCCAACCAACCAAAATGCGGTTATCGTAGTCGACTTAGCCAAAGATCCTAG
CCCGCTGCTGGAGCTTGATTCCGACGCCCTCCGTGAAAGGCTCTACACTAAACGCAGTGAACTTGGTGAAGACGAGTTAC
CCGTACCCATCAAATTGGTTCAACTGAACAAGTGCCCTATTCTCGCACCCGCCAAAACTCTGACGGCTGAAAATGCGGAA
ACGATAGGTATCGATCGCCAACAGTGCTTAAAGAACTTAGCGCTATTACGCGAACACCCAGAGATCCGCGAAAAACTGAT
CGGTTTGTATTCACAAGAACGCGAATACGAGAAAAGTGATGACGTAGACACTCATCTGTATGACGGCTTCTTCTCGCCAG
GCGACAAAACCGCAATGGACATCATTCGTCAAACTGACCCAAATAATTTGGCTGCTTTAGACATCACTTTTGGTGACGAA
CGTATTAAACCTTTGTTGTTCCGTTACCGTGCTCGTCATTTCCCGTGGACGTTAGACGAAGCGGAACAACTGAAATGGGC
TAACCACTGTCGAGAGTTTTACGAAAGTCGCTTAGAAGAGTACATGCTGAACCTAGAAAACCTCGCACACGAGCATGAAA
GTGACGAGAAGAAAATGGCTATCTTGAAAGCGGTTTATCAATACGTAGAAAAGCTAGCGAGCTAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

• Exonuclease (RNase_T) (11-191)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	76.533	99.789	0.764