Detailed information NTG1054199

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BCV36_RS11030
• Genome accession: NZ_CP169997
• Coordinates: 2535884..2536864 (-)
• Length: 326 a.a.
• NCBI ID: WP_010435803.1
• Uniprot ID: A0AAN0N9Q1
• Organism: Vibrio cyclitrophicus strain 10N.286.55.C4
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2530884..2541864

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BCV36_RS11015 (BCV36_11015)	recA	2531415..2532455 (-)	1041	WP_010435812.1	recombinase RecA	Machinery gene
BCV36_RS11020 (BCV36_11020)	pncC	2532595..2533089 (-)	495	WP_016768194.1	nicotinamide-nucleotide amidase	-
BCV36_RS11025 (BCV36_11025)	mutS	2533213..2535774 (+)	2562	WP_016768193.1	DNA mismatch repair protein MutS	-
BCV36_RS11030 (BCV36_11030)	rpoS	2535884..2536864 (-)	981	WP_010435803.1	RNA polymerase sigma factor RpoS	Regulator
BCV36_RS11035 (BCV36_11035)	nlpD	2536963..2537895 (-)	933	WP_016768192.1	murein hydrolase activator NlpD	-
BCV36_RS11040 (BCV36_11040)	-	2537931..2538557 (-)	627	WP_010435798.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
BCV36_RS11045 (BCV36_11045)	surE	2538558..2539301 (-)	744	WP_010435796.1	5'/3'-nucleotidase SurE	-
BCV36_RS11050 (BCV36_11050)	truD	2539377..2540423 (-)	1047	WP_010435794.1	tRNA pseudouridine(13) synthase TruD	-
BCV36_RS11055 (BCV36_11055)	ispF	2540446..2540925 (-)	480	WP_010435793.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BCV36_RS11060 (BCV36_11060)	ispD	2540928..2541629 (-)	702	WP_010435790.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 37267.52 Da
• Isoelectric Point: 5.2707

>NTDB_id=1054199 BCV36_RS11030 WP_010435803.1 2535884..2536864(-) (rpoS) [Vibrio cyclitrophicus strain 10N.286.55.C4]
MSISNAVTKEEFDLNQVTTESETLGKAKRTVTKKTEAKEEAEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIATKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDSDIKNSLIFWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREICLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide

• Length: 981 bp

>NTDB_id=1054199 BCV36_RS11030 WP_010435803.1 2535884..2536864(-) (rpoS) [Vibrio cyclitrophicus strain 10N.286.55.C4]
ATGAGTATAAGCAATGCAGTAACCAAAGAAGAGTTCGATCTTAACCAAGTAACCACGGAATCGGAAACACTTGGAAAAGC
AAAACGAACAGTCACTAAGAAAACCGAAGCGAAAGAAGAAGCTGAAGTTACGTCTAAAAGTTTAGATGCTACTCAACTCT
ACTTAGGCGAAATTGGTTTCTCACCACTACTAACCGCTGAAGAAGAAGTGCTTTATGCACGTCGAGCTCTACGCGGTGAT
GAAGCGGCCCGCAAACGCATGATTGAAAGTAACCTGCGTTTGGTGGTTAAAATATCTCGTCGTTATAGCAACCGTGGTTT
GGCACTTCTCGATCTAATTGAAGAAGGCAACCTAGGCTTGATTCGCGCCGTAGAGAAGTTTGACCCAGAGCGAGGTTTCC
GCTTTTCAACTTACGCGACATGGTGGATTCGTCAAACCATTGAACGTGCTTTAATGAATCAGACTCGCACCATCCGTTTG
CCAATCCATGTTGTGAAAGAGCTGAACATCTACCTACGTACAGCAAGAGAGTTATCACAAAAGCTTGACCATGAACCAAC
GGCTGAAGAAATTGCTACTAAGCTAGACAAGCCAGTTGGTGATGTGAGCAAGATGCTTCGTTTAAACGAGCGAGTGAGCT
CCGTTGATACGCCAATTGGTGGTGACGGTGAGAAAGCACTGTTGGATATTATTCCGGACATCAACAATTCCGATCCTGAG
GTTTCAACTCAAGATAGCGATATCAAGAACTCGTTGATTTTCTGGCTAGATGAGCTGAACCCGAAACAGAAAGAGGTGCT
TGCACGTCGCTTTGGACTACTTGGCTATGAACCGTCAACGTTAGAAGAAGTAGGCCGTGAAATCTGCCTGACTCGTGAAC
GTGTTCGTCAAATCCAAGTTGAAGGTCTTCGCCGTCTACGAGAGATTCTGATCAAGCAAGGTCTGAACATGGAAAACCTG
TTTAACGTTGAAAACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (49-82)

• Sigma-70 region 2 (Sigma70_r2) (87-156)

• Sigma-70, region 4 (Sigma70_r4) (255-308)

• Sigma-70 region 3 (Sigma70_r3) (167-240)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.437	100	0.834