Detailed information NTG0105415

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: R8608_RS06420
• Genome accession: NZ_AP028398
• Coordinates: 1218598..1219557 (+)
• Length: 319 a.a.
• NCBI ID: WP_002876195.1
• Uniprot ID: -
• Organism: Campylobacter jejuni strain BCH-11511
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 1213598..1224557

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R8608_RS06395 (B11511_12810)	-	1213934..1214713 (-)	780	WP_002902667.1	glycosyltransferase family 25 protein	-
R8608_RS06400 (B11511_12820)	-	1214710..1215642 (-)	933	WP_052788764.1	glycosyltransferase family 2 protein	-
R8608_RS06405 (B11511_12830)	-	1215635..1216525 (-)	891	WP_002901180.1	glycosyltransferase	-
R8608_RS06410 (B11511_12840)	-	1216537..1217679 (-)	1143	WP_052788765.1	glycosyltransferase family 8 protein	-
R8608_RS06415 (B11511_12850)	waaV	1217730..1218539 (-)	810	WP_002901182.1	glycosyltransferase family 2 protein	-
R8608_RS06420 (B11511_12860)	waaF	1218598..1219557 (+)	960	WP_002876195.1	lipopolysaccharide heptosyltransferase II	Regulator
R8608_RS06425 (B11511_12870)	gmhA	1219538..1220098 (-)	561	WP_002876196.1	D-sedoheptulose 7-phosphate isomerase	-
R8608_RS06430 (B11511_12880)	rfaE1	1220095..1221480 (-)	1386	WP_002901184.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
R8608_RS06435 (B11511_12890)	rfaD	1221473..1222426 (-)	954	WP_002860242.1	ADP-glyceromanno-heptose 6-epimerase	-
R8608_RS06440 (B11511_12900)	gmhB	1222427..1222988 (-)	562	Protein_1257	D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase	-
R8608_RS06445 (B11511_12910)	-	1223069..1223371 (+)	303	WP_002852762.1	c-type cytochrome	-
R8608_RS06450 (B11511_12920)	ccoS	1223394..1223600 (-)	207	WP_002852798.1	cbb3-type cytochrome oxidase assembly protein CcoS	-

Sequence

Protein

• Length: 319 a.a.
• Molecular weight: 36607.08 Da
• Isoelectric Point: 10.2870

>NTDB_id=105415 R8608_RS06420 WP_002876195.1 1218598..1219557(+) (waaF) [Campylobacter jejuni strain BCH-11511]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHSKDLKLPFKLKLQDPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKSEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENAILVHLDLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNSHR

Nucleotide

• Length: 960 bp

>NTDB_id=105415 R8608_RS06420 WP_002876195.1 1218598..1219557(+) (waaF) [Campylobacter jejuni strain BCH-11511]
ATGAAAATTTTTATACATCTTCCCACTTGGCTGGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCTCGCTATAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAGATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATCCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTCTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAACTTCAAGACCCTCTTGTCTTAAAAAATGGTAAAAAAATTCTAGGACTCAATCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAATCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAACAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAACGCAATATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTCAAAGGGTTATAGAAGAGGCTAGAAATTTACTTAAAAACTCTCATCGATGA

Domains

Predicted by InterproScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (94-294)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	94.025	99.687	0.937