Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ACNUDZ_RS02575 Genome accession   NZ_OZ197085
Coordinates   494171..495253 (+) Length   360 a.a.
NCBI ID   WP_014532468.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S01974-1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 489171..500253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUDZ_RS02555 gdpS 489547..490617 (-) 1071 WP_000460986.1 GGDEF domain-containing protein GdpS -
  ACNUDZ_RS02560 - 490935..491990 (+) 1056 WP_000258150.1 glycosyltransferase family 4 protein -
  ACNUDZ_RS02565 - 492156..492797 (-) 642 WP_000192949.1 YigZ family protein -
  ACNUDZ_RS02570 fakB1 492941..493807 (+) 867 WP_000686345.1 fatty acid kinase binding subunit FakB1 -
  ACNUDZ_RS02575 comFA 494171..495253 (+) 1083 WP_014532468.1 DEAD/DEAH box helicase Machinery gene
  ACNUDZ_RS02580 - 495246..495920 (+) 675 WP_001057961.1 ComF family protein -
  ACNUDZ_RS02585 hpf 495981..496553 (+) 573 WP_000617735.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  ACNUDZ_RS02590 secA 496967..499498 (+) 2532 WP_031775871.1 preprotein translocase subunit SecA -
  ACNUDZ_RS02595 - 499540..499638 (+) 99 WP_374731584.1 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42024.50 Da        Isoelectric Point: 9.6802

>NTDB_id=1054045 ACNUDZ_RS02575 WP_014532468.1 494171..495253(+) (comFA) [Staphylococcus aureus isolate 23S01974-1]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
IEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGQFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=1054045 ACNUDZ_RS02575 WP_014532468.1 494171..495253(+) (comFA) [Staphylococcus aureus isolate 23S01974-1]
ATGGATAATGTAACAAGATATAAAATAACAGAAAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAACAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGAGCAGGTAAGACAGAAATGATGTTCCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
ATTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGCTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATATCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATATGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACAATTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TAGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGTGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-318)

Type III restriction enzyme, res subunit (ResIII)

(25-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

39.233

94.167

0.369