Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   ACEZ45_RS15250 Genome accession   NZ_CP169877
Coordinates   3072016..3072156 (-) Length   46 a.a.
NCBI ID   WP_003152043.1    Uniprot ID   A3KLB4
Organism   Bacillus amyloliquefaciens strain JF     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3067016..3077156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEZ45_RS15230 (ACEZ45_15225) - 3067313..3067696 (-) 384 WP_003152054.1 hotdog fold thioesterase -
  ACEZ45_RS15235 (ACEZ45_15230) comA 3067718..3068362 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  ACEZ45_RS15240 (ACEZ45_15235) - 3068443..3070746 (-) 2304 Protein_2935 histidine kinase -
  ACEZ45_RS15245 (ACEZ45_15240) comQ 3070899..3071831 (-) 933 WP_025650217.1 class 1 isoprenoid biosynthesis enzyme Regulator
  ACEZ45_RS15250 (ACEZ45_15245) degQ 3072016..3072156 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  ACEZ45_RS15255 (ACEZ45_15250) - 3072622..3072963 (+) 342 WP_003152040.1 hypothetical protein -
  ACEZ45_RS15260 (ACEZ45_15255) - 3072970..3074190 (-) 1221 WP_003152038.1 EAL and HDOD domain-containing protein -
  ACEZ45_RS15265 (ACEZ45_15260) - 3074320..3075786 (-) 1467 WP_014305722.1 nicotinate phosphoribosyltransferase -
  ACEZ45_RS15270 (ACEZ45_15265) - 3075804..3076355 (-) 552 WP_003152033.1 cysteine hydrolase family protein -
  ACEZ45_RS15275 (ACEZ45_15270) - 3076452..3076850 (-) 399 WP_003152031.1 YueI family protein -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5518.30 Da        Isoelectric Point: 4.9432

>NTDB_id=1053996 ACEZ45_RS15250 WP_003152043.1 3072016..3072156(-) (degQ) [Bacillus amyloliquefaciens strain JF]
MENKLEEVKQLLFRLENDIRETTDSLRNINKSIDQLDKFSYAMKIS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=1053996 ACEZ45_RS15250 WP_003152043.1 3072016..3072156(-) (degQ) [Bacillus amyloliquefaciens strain JF]
GTGGAAAACAAATTAGAAGAAGTAAAGCAATTATTATTCCGACTTGAAAATGATATCAGAGAAACAACCGACTCATTACG
AAACATTAACAAAAGCATTGATCAGCTCGATAAATTCTCATATGCAATGAAAATTTCTTAA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

89.13

100

0.891

Multiple sequence alignment