Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | ABUS19_RS08245 | Genome accession | NZ_CP169872 |
| Coordinates | 1736851..1737231 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain Up377 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1731851..1742231
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABUS19_RS08215 | kdsB | 1732754..1733515 (+) | 762 | WP_000680696.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| ABUS19_RS08220 | - | 1733527..1734507 (+) | 981 | WP_004747384.1 | DNA polymerase III, delta' subunit | - |
| ABUS19_RS08225 | - | 1734519..1734860 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| ABUS19_RS08230 | - | 1734878..1735651 (+) | 774 | WP_000497302.1 | TatD family hydrolase | - |
| ABUS19_RS08235 | - | 1735689..1736297 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| ABUS19_RS08240 | - | 1736307..1736861 (+) | 555 | WP_000841371.1 | type II secretion system protein | - |
| ABUS19_RS08245 | xcpV | 1736851..1737231 (+) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| ABUS19_RS08250 | xcpW | 1737231..1737932 (+) | 702 | WP_004747380.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| ABUS19_RS08255 | gspK | 1737932..1738891 (+) | 960 | WP_004747379.1 | type II secretion system minor pseudopilin GspK | - |
| ABUS19_RS08260 | - | 1739121..1739717 (+) | 597 | WP_000908453.1 | 6-carboxytetrahydropterin synthase | - |
| ABUS19_RS08265 | ung | 1739768..1740481 (+) | 714 | WP_001177527.1 | uracil-DNA glycosylase | - |
| ABUS19_RS08270 | - | 1740478..1741602 (+) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| ABUS19_RS08275 | tadA | 1741609..1742112 (+) | 504 | WP_001997771.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=1053911 ABUS19_RS08245 WP_000836911.1 1736851..1737231(+) (xcpV) [Acinetobacter baumannii strain Up377]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=1053911 ABUS19_RS08245 WP_000836911.1 1736851..1737231(+) (xcpV) [Acinetobacter baumannii strain Up377]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTTGCAGCTGTCGCTTTAACTAA
AGTTGCAATGCAGTACACTCAGTCTACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTTGCAGCTGTCGCTTTAACTAA
AGTTGCAATGCAGTACACTCAGTCTACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |