Detailed information NTG0105388

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: R8952_RS06095
• Genome accession: NZ_AP028396
• Coordinates: 1183303..1184262 (+)
• Length: 319 a.a.
• NCBI ID: WP_317653969.1
• Uniprot ID: -
• Organism: Campylobacter jejuni strain BCH-11505
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 1178303..1189262

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R8952_RS06070 (B11505_11950)	-	1178652..1179674 (-)	1023	WP_002891861.1	hypothetical protein	-
R8952_RS06075 (B11505_11960)	-	1179745..1180518 (+)	774	WP_002891857.1	glycosyltransferase family 25 protein	-
R8952_RS06080 (B11505_11970)	wlaTB	1180511..1181467 (+)	957	WP_002860237.1	class E lipooligosaccharide biosynthesis protein WlaTB	-
R8952_RS06085 (B11505_11980)	wlaTC	1181464..1182423 (+)	960	WP_002860238.1	class E lipooligosaccharide biosynthesis protein WlaTC	-
R8952_RS06090 (B11505_11990)	-	1182426..1183244 (-)	819	WP_002876193.1	glycosyltransferase family 2 protein	-
R8952_RS06095 (B11505_12000)	waaF	1183303..1184262 (+)	960	WP_317653969.1	lipopolysaccharide heptosyltransferase II	Regulator
R8952_RS06100 (B11505_12010)	gmhA	1184243..1184803 (-)	561	WP_002876196.1	D-sedoheptulose 7-phosphate isomerase	-
R8952_RS06105 (B11505_12020)	rfaE1	1184800..1186185 (-)	1386	WP_002901184.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
R8952_RS06110 (B11505_12030)	rfaD	1186178..1187131 (-)	954	WP_002860242.1	ADP-glyceromanno-heptose 6-epimerase	-
R8952_RS06115 (B11505_12040)	gmhB	1187132..1187693 (-)	562	Protein_1189	D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase	-
R8952_RS06120 (B11505_12050)	-	1187774..1188076 (+)	303	WP_002852762.1	c-type cytochrome	-
R8952_RS06125 (B11505_12060)	ccoS	1188099..1188305 (-)	207	WP_002852798.1	cbb3-type cytochrome oxidase assembly protein CcoS	-

Sequence

Protein

• Length: 319 a.a.
• Molecular weight: 36635.13 Da
• Isoelectric Point: 10.2870

>NTDB_id=105388 R8952_RS06095 WP_317653969.1 1183303..1184262(+) (waaF) [Campylobacter jejuni strain BCH-11505]
MKIFIHLPTWLGDAVMVSPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHSKDLKLPFKLKLQDPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKSEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENAILVHLDLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNSHR

Nucleotide

• Length: 960 bp

>NTDB_id=105388 R8952_RS06095 WP_317653969.1 1183303..1184262(+) (waaF) [Campylobacter jejuni strain BCH-11505]
ATGAAAATTTTTATACATCTTCCCACTTGGCTGGGCGATGCAGTGATGGTTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCTCGCTATAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAGATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATCCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTCTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAACTTCAAGACCCTCTTGTCTTAAAAAATGGTAAAAAAATTCTAGGACTCAATCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAATCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAACAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAACGCAATATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTCAAAGGGTTATAGAAGAGGCTAGAAATTTACTTAAAAACTCTCATCGATGA

Domains

Predicted by InterproScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (94-294)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	93.711	99.687	0.934