Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   ABUS10_RS16710 Genome accession   NZ_CP169869
Coordinates   3577495..3577821 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain Up280     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3572495..3582821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS10_RS16690 - 3572595..3573224 (-) 630 WP_199948184.1 FHA domain-containing protein -
  ABUS10_RS16695 gspD 3573265..3575541 (-) 2277 WP_001196426.1 type II secretion system secretin GspD -
  ABUS10_RS16700 - 3575583..3576419 (-) 837 WP_000870031.1 type II secretion system protein N -
  ABUS10_RS16705 gspN 3576419..3577162 (-) 744 WP_000730343.1 type II secretion system protein N -
  ABUS10_RS16710 hns 3577495..3577821 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  ABUS10_RS16715 - 3578016..3578456 (-) 441 WP_000661569.1 thioesterase family protein -
  ABUS10_RS16720 - 3578464..3579657 (-) 1194 WP_000681780.1 membrane protein -
  ABUS10_RS16725 - 3579667..3580506 (-) 840 WP_002068006.1 hypothetical protein -
  ABUS10_RS16730 - 3580515..3581282 (-) 768 WP_000897410.1 uroporphyrinogen-III synthase -
  ABUS10_RS16735 hemC 3581287..3582204 (-) 918 WP_031949753.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=1053878 ABUS10_RS16710 WP_000801427.1 3577495..3577821(-) (hns) [Acinetobacter baumannii strain Up280]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=1053878 ABUS10_RS16710 WP_000801427.1 3577495..3577821(-) (hns) [Acinetobacter baumannii strain Up280]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAAACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1

Multiple sequence alignment