Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   ABUS10_RS16225 Genome accession   NZ_CP169869
Coordinates   3467437..3469665 (+) Length   742 a.a.
NCBI ID   WP_024434040.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Up280     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3462437..3474665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS10_RS16200 lnt 3462823..3464382 (+) 1560 WP_001203090.1 apolipoprotein N-acyltransferase -
  ABUS10_RS16205 - 3464384..3464722 (-) 339 WP_000434938.1 tRNA-binding protein -
  ABUS10_RS16210 - 3464867..3465211 (-) 345 WP_002067211.1 hypothetical protein -
  ABUS10_RS16215 gspG 3465478..3466059 (-) 582 WP_199947847.1 type II secretion system major pseudopilin GspG -
  ABUS10_RS16220 gspF 3466083..3467288 (-) 1206 WP_001112089.1 type II secretion system inner membrane protein GspF -
  ABUS10_RS16225 priA 3467437..3469665 (+) 2229 WP_024434040.1 primosomal protein N' Machinery gene
  ABUS10_RS16230 - 3469742..3471583 (+) 1842 WP_168649693.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  ABUS10_RS16235 - 3471749..3472624 (+) 876 WP_001281765.1 Hsp33 family molecular chaperone HslO -
  ABUS10_RS16240 - 3472763..3473374 (+) 612 WP_001105725.1 LysE family translocator -
  ABUS10_RS16245 - 3473525..3474481 (+) 957 WP_199947851.1 DnaJ C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 83927.79 Da        Isoelectric Point: 8.5662

>NTDB_id=1053874 ABUS10_RS16225 WP_024434040.1 3467437..3469665(+) (priA) [Acinetobacter baumannii strain Up280]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTKAQYERAQVGSRVAISFGRQNLIGIITEKVDLQESFTGHFQLKAISELL
DDEPILDEQVLNLLTWSAQYYQFPIGEVMQTALPALLRQGKPMDVLFHLWKIIPCDNAEALLKRSIKQQDAYQILKLHPA
GTTENILNLSGVETATLKALQKKGLVDCTLEPHDFSPAPVQLAQMPLTLNEDQKKATQHVLNAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQGCPVLLGSATPSIDSYHLVETGKLTALQLNQRAGHALLPKMH
LIDLKIVKKQHGISQPLIEQIKNTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTV
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPDHDVIRVDRDSTSRVGSWQKIYDRIQQNKPSILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYAVLIRAESKDRDYTLHFLNEAAEQLRQIAGDIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWAQ
LVHAPRQHQLRLSIDVDPQEFS

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=1053874 ABUS10_RS16225 WP_024434040.1 3467437..3469665(+) (priA) [Acinetobacter baumannii strain Up280]
ATGACCATAACGCCAAAGCCTGATTCAGTTGTTTATCGTGTGCGTGTTGCCGTACCTGTGCATCTGTACGACACTTTTGA
CTATACACTCACCAAAGCACAATATGAACGGGCTCAAGTAGGTTCACGCGTCGCAATTTCATTTGGACGGCAAAACCTGA
TTGGTATCATTACTGAAAAAGTTGACCTACAAGAATCATTTACAGGTCACTTTCAGCTTAAGGCCATTTCTGAACTTTTA
GATGATGAGCCTATTTTAGATGAACAAGTTTTAAATTTATTGACATGGTCAGCACAATATTACCAATTTCCAATTGGTGA
GGTGATGCAGACTGCTTTACCTGCGTTATTGCGTCAGGGCAAACCCATGGATGTTTTATTTCATCTATGGAAAATCATTC
CATGTGACAATGCCGAAGCTTTACTAAAACGTTCAATCAAACAGCAAGATGCTTATCAAATTTTAAAATTACATCCTGCC
GGAACCACTGAAAATATTCTCAATTTAAGTGGTGTAGAAACTGCAACACTTAAAGCACTACAAAAGAAAGGTCTCGTAGA
CTGTACGCTTGAGCCTCATGACTTTAGCCCAGCCCCTGTGCAATTAGCGCAAATGCCACTCACGCTCAATGAAGACCAAA
AGAAGGCCACCCAGCATGTCCTTAATGCACAGCATCAATATCAAGCGTTTTTGTTGGATGGTTTAACGGGAAGTGGTAAA
ACTGAAGTTTATTTGCACATCATGCATGAAGTGCTAAAGCAAGGTAAGCAAGTATTAGTCTTAGTTCCTGAAATTGGTTT
AACCCCTCAAACCATTTCGCGTTTTAAGTCTCGTTTTAACTGCGACATCGCTTTATTACATTCGGGATTAAATGACTCTA
AACGCCTACAAGCATGGCAACAAGCACAGACTGGAAAGGCCTCTATTATTTTAGGAACACGTTCAGCCATTTATACCCCG
CTGCCACGTTTGGGCCTGATCATTTTAGATGAAGAACATGATCTTTCTTATAAACAACAGGAAGGTTTCCGTTACCATGC
GCGTGATGTCGCGCTTTATCGAGGACATTTACAAGGCTGTCCTGTTCTTTTAGGTTCGGCAACTCCAAGCATTGATAGCT
ATCACTTAGTCGAAACTGGCAAGTTAACTGCACTTCAGCTGAACCAGCGTGCAGGCCATGCGCTTTTACCAAAAATGCAT
TTGATTGATCTTAAAATTGTCAAAAAACAGCATGGTATTAGTCAGCCTTTAATTGAACAGATTAAAAATACCCTGGCAAG
AAAAGAACAAGTTTTAATTTTTTTAAACCGACGTGGTTATGCACCTGTTCTGGTCTGTGAAAGTTGTGGTTGGCAAGCGA
ATTGTCCGCATTGTGATGCGCATTTTACGTTACACACTCAGCCTTATTCTTACTTACATTGCCACCACTGTGGCACCGTT
CATCGCCTGCCAGACCACTGCCCTGAGTGTCAGCAAAAGAGCCTCAAAACTTTAGGTGCTGGCACAGCCAAGGTTGAAGA
GCATTTACAAGAATTATTTCCAGATCATGATGTGATTCGGGTCGATCGTGACAGCACCAGCCGAGTCGGTAGCTGGCAAA
AAATTTATGATCGCATTCAGCAAAATAAACCTTCGATTTTGCTCGGTACGCAAATGTTGGCAAAAGGTCACCATTTTCCG
CATGTGACCTTGGTTGCTATTTTAGACATCGATGCAGGTTTATTGAGTGTCGATATTCGAGCGCCAGAGCGTACTGCTCA
ATTGATTGTACAAGTGGCTGGTCGTGCAGGTCGTGGAGAACATAAGGGGCATGTTTATTTACAGACTTTAAGGCCAGATC
ACCCTTTATTGACCACACTTATTGAAAAAGATTATCGGGCAGTCGCGAAACAAACATTGGCTGAGCGTAAAGTTGCATTA
CTGCCGCCTTATCGCTATGCCGTACTTATACGCGCTGAATCGAAAGATCGCGACTATACCTTGCATTTTTTAAATGAAGC
TGCCGAGCAACTTCGCCAAATTGCAGGTGACATTGTTGATATCTGGGGACCAATTCCAGCGCCAATGGAACGTAAAGCGG
GACGTTACCGCGCACATATGGTGATTTTGTCTGCTGACCGCGCTCGTCTGCATTTTTACTTAAGACAATGGTGGGCTCAA
TTGGTCCATGCGCCTAGACAGCATCAACTCAGACTCTCAATTGATGTTGACCCGCAAGAATTTAGTTAG

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(643-738)

Type III restriction enzyme, res subunit (ResIII)

(208-369)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

97.978

100

0.98

Multiple sequence alignment