Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   ABUS10_RS02285 Genome accession   NZ_CP169869
Coordinates   469800..470684 (+) Length   294 a.a.
NCBI ID   WP_199948757.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Up280     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 464800..475684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS10_RS02260 - 465198..466445 (-) 1248 WP_000893466.1 YihY family inner membrane protein -
  ABUS10_RS02265 wrbA 466733..467326 (+) 594 WP_001183355.1 NAD(P)H:quinone oxidoreductase -
  ABUS10_RS02270 - 467379..467954 (-) 576 WP_000543071.1 xanthine phosphoribosyltransferase -
  ABUS10_RS02275 - 468027..468740 (-) 714 WP_032027127.1 DUF3108 domain-containing protein -
  ABUS10_RS02280 - 468898..469569 (-) 672 WP_001193961.1 hypothetical protein -
  ABUS10_RS02285 tonB2 469800..470684 (+) 885 WP_199948757.1 energy transducer TonB Machinery gene
  ABUS10_RS02290 ybeY 470774..471250 (-) 477 WP_000703571.1 rRNA maturation RNase YbeY -
  ABUS10_RS02295 - 471260..472348 (-) 1089 WP_000122983.1 PhoH family protein -
  ABUS10_RS02300 miaB 472386..473837 (-) 1452 WP_000218141.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33594.47 Da        Isoelectric Point: 9.4087

>NTDB_id=1053855 ABUS10_RS02285 WP_199948757.1 469800..470684(+) (tonB2) [Acinetobacter baumannii strain Up280]
MLKKRSLSIEPFYYWWQDRVFIAAIILAILLHIFVLLIHFAMPAPSEQSTKEIAISIRPTEDVIKHADFLAQADQQGSGA
FRAAHRMSSNSPTPMPSDASTGEAQLETLEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDANMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=1053855 ABUS10_RS02285 WP_199948757.1 469800..470684(+) (tonB2) [Acinetobacter baumannii strain Up280]
ATGTTGAAAAAAAGAAGTCTATCCATAGAGCCTTTTTATTATTGGTGGCAAGACCGAGTCTTTATCGCTGCAATAATATT
AGCAATCTTACTGCATATTTTTGTGTTGCTCATCCATTTTGCGATGCCTGCGCCGTCAGAACAATCGACTAAAGAAATTG
CAATATCGATTCGTCCTACTGAAGATGTAATCAAGCATGCAGACTTCTTAGCTCAAGCCGATCAACAAGGTTCAGGGGCT
TTTCGGGCAGCTCATCGGATGTCGAGTAACTCTCCAACGCCTATGCCAAGTGATGCTTCAACAGGAGAAGCTCAGCTAGA
AACTTTAGAAAAAGTGCAGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTACTCATGACTGTATTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGAAAAAAAGCACTTGAACAATTACAAAGTCAGTTTCAGGCAAAAGCTGCCATGGTAGCGAGT
CTTGAAGCTCAGTATTTACAACGTCAGCAAGATTTTAGTCGCCAACAAAAGATAAAAACAGTAGATGGTATTCAAGCCAA
GAAAGATGCGTCGGCAGCTTATCTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGTTATTATCCAGAAGAAG
CGAAACAGCAACAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGTTTG
CTTGAAAGCTCAGGCCATCCAGTTCTAGATGAAGCAGCAAAGGCATCGGTACGGCGTGGAGCGCCGTTTGGCCGTTTTGA
TGCAAATATGAAAGATATTTCGGAGCTTCGTATTATTCGTACATGGCGTTTTGATCCAGCTGAAGCTGAATTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

99.32

100

0.993

Multiple sequence alignment