Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   ABUS28_RS16395 Genome accession   NZ_CP169866
Coordinates   3410518..3410844 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain Rp779     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3405518..3415844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS28_RS16375 - 3405619..3406248 (-) 630 WP_261480851.1 FHA domain-containing protein -
  ABUS28_RS16380 gspD 3406289..3408565 (-) 2277 WP_261480850.1 type II secretion system secretin GspD -
  ABUS28_RS16385 - 3408607..3409443 (-) 837 WP_000862737.1 type II secretion system protein N -
  ABUS28_RS16390 gspN 3409443..3410186 (-) 744 WP_000730343.1 type II secretion system protein N -
  ABUS28_RS16395 hns 3410518..3410844 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  ABUS28_RS16400 - 3411039..3411479 (-) 441 WP_000661569.1 thioesterase family protein -
  ABUS28_RS16405 - 3411487..3412680 (-) 1194 WP_004836276.1 hypothetical protein -
  ABUS28_RS16410 - 3412690..3413529 (-) 840 WP_004836279.1 hypothetical protein -
  ABUS28_RS16415 - 3413538..3414305 (-) 768 WP_004836281.1 uroporphyrinogen-III synthase -
  ABUS28_RS16420 hemC 3414310..3415227 (-) 918 WP_031956197.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=1053830 ABUS28_RS16395 WP_000801427.1 3410518..3410844(-) (hns) [Acinetobacter baumannii strain Rp779]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=1053830 ABUS28_RS16395 WP_000801427.1 3410518..3410844(-) (hns) [Acinetobacter baumannii strain Rp779]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCATATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterProScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1

Multiple sequence alignment